CK937618

Overview
NameCK937618
Unique NameCK937618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL+R  AP  W +  K+GG +  + S GPH     LPL +I+R+ LKYA T RE   I+ + +V +D  +R D  +P G MD
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMD 84          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL+R  AP  W +  K GG +  KPS GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MD
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMD 84          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  123 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MD
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMD 89          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL+R  +P  W +  K GG +A +PS GPH     +PL L++R+ L+YA T RE   I+ + ++ VD  VR +  +P G MD
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMD 84          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  135 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            HL++  AP  W +  K GG +A +PS+GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MD
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMD 84          
The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4E_PYRIL6.198e-1141.4630S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_PYRAR6.198e-1142.6830S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_KORCO6.198e-1142.3530S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_THENV8.094e-1140.2430S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_PYRCJ8.094e-1141.4630S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bp
GGGGGCGGGAGTGGAGCTAGCATCGCTTGTNNNTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGCGGGCTCAAAATCATACTTGTG
TTCATGATGATTCCTCCATTTCTGATATCATATTCCAAATTTAAGCCTCC
TTGATTTACTCTTTCTTTAAGAAGTTTTTTAAGATTTTTCACTTGTCCTT
TTGACTATCAGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGAC
back to top