CK937617

Overview
NameCK937617
Unique NameCK937617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 54/149 (36.24%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 444
            EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + +K+      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + +  +E
Sbjct:  300 ELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.805e-24
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LK+     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  298 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.935e-22
Identity = 55/155 (35.48%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAF----SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            +LVF++NYLG +  TF+LNFS+   QIIAQYY F+R G  GY  I + C      + + L+K G F+++    G +P V +    +L       ++++SE LR  GW V +Y++P++  +V V RVV+R  FSR L    +  ++  ++  +  P
Sbjct:  294 DLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448          
The following BLAST results are available for this feature:
BLAST of CK937617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEC_LISMO4.495e-2536.24Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_SHIFL1.308e-2438.06Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI1.308e-2438.06Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL61.308e-2438.06Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO571.308e-2438.06Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL1.308e-2438.06Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI1.308e-2438.06Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL61.308e-2438.06Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO573.805e-2437.42Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADB_DICDI7.935e-2235.48Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937617 ID=CK937617; Name=CK937617; organism=Citrus sinensis; type=EST; length=808bp
GGGGAACTTGTCTTTCACATCAACTACCTTGGATCTGATCAACCGACTTT
CACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATC
AGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGC
ATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTT
TGAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGA
AGGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAG
TTTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGT
GGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGG
AAAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTT
CCAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGA
AACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGG
AAGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCA
TGCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAA
TATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGT
GTGTTTACTTTATGTGATTGTTGAAGCCTATTTATGTTTTCTTGCACGCT
TGTGAAGTGGCAAATAGAGGTATATGCTTATTGCAAAAAAAAAAAAAAAA
AAAAAAAA
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