CK937617

Overview
NameCK937617
Unique NameCK937617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.354e-20
Identity = 51/153 (33.33%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 453
            +LVF +NYLG + PTF+LNFS+   QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+I+    G +P   + LK  +     +F++S+ +R  GW + +YT+P N  ++ V RV++R  FS  +   LI      ++  +  P
Sbjct:  296 DLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP-NLPDIVVQRVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP 447          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.893e-15
Identity = 71/243 (29.22%), Postives = 104/243 (42.80%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA----LREGLEKTGRFEILS---------------KDV---------GVPLVAFSLKDSSAHTVFEISEG-----LRKFGWIVPAYTMPA---NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI---------------ESLPSRVSTKTAHVIPMVNETQGDKPLKKSV---RETQEEVTRHWK 570
            EL F + YLG  + TF LNFS+   Q++ QY+ F+ LG  GY+   +N +  ARA    L    +  G FEI+S               KD          GVPLVAF L         E+ +      LR  GWI+P Y +P     ++   VLRVV R +    L + LI  IE +L ++               E  P R S+    ++  +   Q D P    +    + +E  TR+++
Sbjct:  340 ELRFKLKYLGGVEETFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKLSKKFHEEYPEVPQAILSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVDIESILTKLIHSYEKVCHHIELASEQTPERKSSFIYEMLLALASPQDDIPTPDEIEKKNKLKETTTRNYR 582          
The following BLAST results are available for this feature:
BLAST of CK937617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GADA_DICDI4.354e-2033.33Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_YEAST1.893e-1529.22Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_C03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937617 ID=CK937617; Name=CK937617; organism=Citrus sinensis; type=EST; length=808bp
GGGGAACTTGTCTTTCACATCAACTACCTTGGATCTGATCAACCGACTTT
CACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATC
AGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGC
ATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTT
TGAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGA
AGGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAG
TTTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGT
GGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGG
AAAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTT
CCAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGA
AACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGG
AAGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCA
TGCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAA
TATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGT
GTGTTTACTTTATGTGATTGTTGAAGCCTATTTATGTTTTCTTGCACGCT
TGTGAAGTGGCAAATAGAGGTATATGCTTATTGCAAAAAAAAAAAAAAAA
AAAAAAAA
back to top