CK937613

Overview
NameCK937613
Unique NameCK937613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_MACFA (40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R++K++GLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_HUMAN (40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R++K++GLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_BOVIN (40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            QTE+A+ KQP +F +               R++K++GLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.780e-46
Identity = 93/153 (60.78%), Postives = 111/153 (72.55%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            Q EKAF KQ   F +               R++K++GLG++TP++AIEGTYIDKKCPFT  VSIRG IL GT  S KM RT++VRRNYLH++KKY R+EKRHSNIPAH+SP F VKEGD V IGQCRPLSKTVRFNV+K   + +S    KAF
Sbjct:    5 QAEKAFQKQQVSFKNRFQLKASKGKEGI--RYYKNIGLGYRTPKDAIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_YEAST (40S ribosomal protein S11 OS=Saccharomyces cerevisiae GN=RPS11A PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.391e-45
Identity = 89/153 (58.17%), Postives = 113/153 (73.86%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            Q+E+AF KQP +F +               R++K+ GLGFKTP+ AIEG+YIDKKCPFTG VSIRG+IL GT  S KM+RTI++RR YLH++ KY RYEKRH N+P H+SP FRV+ GD V +GQCRP+SKTVRFNV+KV  + ++G A K F
Sbjct:    8 QSERAFQKQPHIFNNPKVKTSKRT-----KRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV--SAAAGKANKQF 153          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_SCHPO (40S ribosomal protein S11 OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 87/141 (61.70%), Postives = 105/141 (74.47%), Query Frame = 1
Query:  106 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 528
            Q+E+AF KQP +F ++              R++K +GLGFKTP EAI G Y+DKKCPF G VSIRGRIL GT  S KM+RTII+RR YLHF+ KY RYEKRH N+ AH+SP FR+ EGD V +GQCRPLSKTVRFNVL+V+
Sbjct:    8 QSERAFQKQPHIFQNAKKGAG--------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVV 140          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_DROPS (40S ribosomal protein S11 OS=Drosophila pseudoobscura pseudoobscura GN=RpS11 PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 92/157 (58.60%), Postives = 109/157 (69.43%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            MA+Q E+AF KQ  V L+               R ++ +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G     KM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGVTKKKIL--RRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLKV---NKGQGAKKSF 152          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_DROYA (40S ribosomal protein S11 OS=Drosophila yakuba GN=RpS11 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            MA+Q E+AF KQ  V L+               R  + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGITKKKLL--RRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_DROME (40S ribosomal protein S11 OS=Drosophila melanogaster GN=RpS11 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 93/157 (59.24%), Postives = 109/157 (69.43%), Query Frame = 1
Query:   97 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 564
            MA+Q E+AF KQ  V L+               R  + +GLGFKTPREAI+GTYIDKKCP+TG V IRGRIL G    AKM RTI++RR+YLHFV+KY R+EKRH N+  H SP FR V+ GD V IG+CRPLSKTVRFNVLKV       GAKK+F
Sbjct:    1 MADQNERAFQKQFGVNLNRKVKPGITKKKLL--RRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV---SKGQGAKKSF 152          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS11_ANOGA (40S ribosomal protein S11 OS=Anopheles gambiae GN=RpS11 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.218e-41
Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 1
Query:  196 RFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 567
            R   S+GLGFKTP+EAI GTYIDKKCPFTG +SIRGRIL G     KM+RTI++RR+YLHF++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV       G+KK F+
Sbjct:   30 RMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRILTGVVRKMKMHRTIVIRRDYLHFIRKYDRFEKRHRNMSVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKV---SKMAGSKKKFS 151          
The following BLAST results are available for this feature:
BLAST of CK937613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_MACFA7.375e-4759.0940S ribosomal protein S11 OS=Macaca fascicularis G... [more]
RS11_HUMAN7.375e-4759.0940S ribosomal protein S11 OS=Homo sapiens GN=RPS11... [more]
RS11_BOVIN7.375e-4759.0940S ribosomal protein S11 OS=Bos taurus GN=RPS11 P... [more]
RS11_DICDI4.780e-4660.7840S ribosomal protein S11 OS=Dictyostelium discoid... [more]
RS11_YEAST1.391e-4558.1740S ribosomal protein S11 OS=Saccharomyces cerevis... [more]
RS11_SCHPO2.372e-4561.7040S ribosomal protein S11 OS=Schizosaccharomyces p... [more]
RS11_DROPS2.455e-4258.6040S ribosomal protein S11 OS=Drosophila pseudoobsc... [more]
RS11_DROYA3.206e-4259.2440S ribosomal protein S11 OS=Drosophila yakuba GN=... [more]
RS11_DROME3.206e-4259.2440S ribosomal protein S11 OS=Drosophila melanogast... [more]
RS11_ANOGA1.218e-4164.8040S ribosomal protein S11 OS=Anopheles gambiae GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_D12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937613 ID=CK937613; Name=CK937613; organism=Citrus sinensis; type=EST; length=702bp
GGGGCTCCGCGCTTGATCCATGGTTTTCTGNNNNNNGTTAGCCACCTCCG
CCCAGTGCGTCCATCATCCCCAACAACTCAGCCCCGAAATCCAGCCATGG
CGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGC
TCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATT
CTGGAAGAGCATGGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAG
GGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGG
GGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCAT
CATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTATG
AGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGTG
AAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTCAAAGAC
GGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTGGTGGTG
CAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCCGCTGTTTCCAACAT
TAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGGATTTTTGC
ATTGGGAATTAAATCCTTTTATGTCCTAATATATATTTTCTAGAGTAAAA
AA
back to top