CK937613

Overview
NameCK937613
Unique NameCK937613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  196 RFWKSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 528
            R  K +GLG K PR   +    D  CPF G + +RG IL G   S +M++T+IV R Y  + +KY+R+E+R S IPAH  PC   +EGD V I +CRPLSKT  F V++V+
Sbjct:    6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLSKTKSFVVIEVL 112          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 525
            K +GL  K P+        D +CPF G++++RG+I  GT  SAKM+++++V R YL    KY RYEKR S + AH  PC   KEGD V+I +CRPLSKT  F V++V
Sbjct:    3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLSKTKTFVVVEV 105          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 528
            K++GL    P +  +    D  CPF G++ +RG+++ G   S +M  T++V RN+LH V+KY RYEKR S I AH++PC   K GD V I +CRPL+KT  + V++VI
Sbjct:    3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLNKTTSYVVVEVI 106          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 528
            +++GL    P    E    D  CPF GT+ +RG+++ G   S +MN T++V R +LH+VKKY+RYEKR S   AH +PC     GD V I +CRPLSKT  F V++V+
Sbjct:    3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLSKTTNFVVVEVM 106          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 525
            + +GL    P +       D  CPF GT+ +RG+++ G   S KM  +++V+R+YLHFV+KYQRYEKR S I AH  PC   + GD V I +CRPLSKT  + V++V
Sbjct:    3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKTYVVVEV 105          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 522
            + +GL    P E    +Y    CPF GT+S+RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S + AH  PC   K GD V I +CR +SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRISKTKSYVVVK 104          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 522
            + +GL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+SKT  F V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPISKTKSFVVVK 104          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 522
            + +GL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVK 104          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 525
            +++GL  + P E  +    D  CPF G +S+RG+++ G   S +M  TI+V R+YLH+V+KY+RYEKR S + AH  PC +VK GD V I +CRP+SK+  F V++V
Sbjct:    3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPISKSTTFVVVEV 105          
BLAST of CK937613 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  205 KSMGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 525
            +++GL  + P++  +    D  CPF GT+ +RG+++ G   S KM  T++V R+YLH+V+KY RYEKR S + AH  PC + K GD V I +CRPLSK+  + V++V
Sbjct:    3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLSKSTTYVVVEV 105          
The following BLAST results are available for this feature:
BLAST of CK937613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_METKA1.654e-2246.8530S ribosomal protein S17P OS=Methanopyrus kandler... [more]
RS17_UNCMA6.287e-2247.6630S ribosomal protein S17P OS=Uncultured methanoge... [more]
RS17_METLZ2.389e-2144.4430S ribosomal protein S17P OS=Methanocorpusculum l... [more]
RS17_METMJ3.120e-2145.3730S ribosomal protein S17P OS=Methanoculleus maris... [more]
RS17_METHJ3.120e-2145.7930S ribosomal protein S17P OS=Methanospirillum hun... [more]
RS17_METBF3.120e-2146.2330S ribosomal protein S17P OS=Methanosarcina barke... [more]
RS17_METMA4.075e-2147.1730S ribosomal protein S17P OS=Methanosarcina mazei... [more]
RS17_METAC4.075e-2146.2330S ribosomal protein S17P OS=Methanosarcina aceti... [more]
RS17_METPE5.322e-2145.7930S ribosomal protein S17P OS=Methanosphaerula pal... [more]
RS17_METB61.549e-2043.9330S ribosomal protein S17P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937613 ID=CK937613; Name=CK937613; organism=Citrus sinensis; type=EST; length=702bp
GGGGCTCCGCGCTTGATCCATGGTTTTCTGNNNNNNGTTAGCCACCTCCG
CCCAGTGCGTCCATCATCCCCAACAACTCAGCCCCGAAATCCAGCCATGG
CGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGC
TCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATT
CTGGAAGAGCATGGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAG
GGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGG
GGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCAT
CATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTATG
AGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGTG
AAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTCAAAGAC
GGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTGGTGGTG
CAAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCCGCTGTTTCCAACAT
TAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGGATTTTTGC
ATTGGGAATTAAATCCTTTTATGTCCTAATATATATTTTCTAGAGTAAAA
AA
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