EY665887

Overview
NameEY665887
Unique NameEY665887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVA 477
            V DV     +K  A  LK    +  P W   VKTG  KE +P   DW+Y+R AS+ R++Y  G +G+   R  YGG KR GS PP F K SG++ R+ LHQL+    ++  ++ GR +T  G+  LD+VA
Sbjct:    4 VYDVPADLLIKRVAERLK--DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-KTREGRVVTPMGRSFLDKVA 130          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 53/133 (39.85%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRI 486
            V DV   + ++  A  LK    I +P W D VKTG  +E  P   DW+YIR AS+ RKIY  G +GV   R  YGG K  G  P HF K SG++ R  L +L+   ++E  +  GR +T  G+  LD +A  +
Sbjct:    4 VYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVE-KTPEGRVVTPKGRSFLDNIAKEV 134          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 51/130 (39.23%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVA 477
            V DV     V+  A  LK   +I+ P W   VKTG  KE  P   DW+Y R AS+ R++Y  G +G+   R  YGG K  G  P  F K+ GS+ R  L QL+    IE     GR +T  G+  LD++A
Sbjct:    4 VYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRVVTPKGRSFLDKIA 133          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   85 NVKDVSPHEFVKAYAAHLKRS-GKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGG-LGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRI 486
            N  +V     ++  A  LK    +++ P W    KTG  KE  P D DW+Y+RAAS+ RK+Y     +G+ +FR IYGG +  GS P HF K+ GSV R IL QL+   ++      GR I+ +G+  LD  A  I
Sbjct:    3 NALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRGRTISPAGRSLLDTTAREI 138          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   85 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRI 486
            +VK V     +   +  LK   KI+ P W   VKTG  KE  P   DW Y+RAASM RK+Y  G LG+      YGG    GS   H +  S S+ R + H+L++  +++   K GR ++  G   LD  +  I
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK-GRSLSPQGMSLLDNASKEI 135          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   94 DVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGS----CPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAG 480
            DV P E ++A    L     IE P W +  KTG  +EL P   D++  RAAS+ RK+   G +GV + R  YG  K+  +     P   +K SG++ R  L QL++   +E     GRR+T  G+  LD  AG
Sbjct:    6 DVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSENDGRRVTGDGRSLLDDTAG 138          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   85 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVA 477
            +VK V     +   +  LK   KI  P W+  VKTG  +E +P + DW Y+RAA+M RK+Y  G LG+      YGG    GS   H ++ S S+ R++ H+L+    ++   K GR ++  G   LD  +
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK-GRSLSPQGMSLLDNAS 132          
The following BLAST results are available for this feature:
BLAST of EY665887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19E_ARCFU2.354e-2040.7730S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_METJA1.168e-1939.8530S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_PYRHO7.571e-1939.2330S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_AERPE1.687e-1838.9730S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_THEVO5.426e-1735.8230S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_HALMA3.517e-1636.0930S ribosomal protein S19e OS=Haloarcula marismort... [more]
RS19E_THEAC1.336e-1534.3530S ribosomal protein S19e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665887 ID=EY665887; Name=EY665887; organism=Citrus sinensis; type=EST; length=772bp
ACAGTCACATAGCACATGCCGCAGCTGCTCCGCCGCTGAAGCACAGACTG
AGAGAGAGACAGAGAGAGAATGGAGACTGCAAAAAATGTGAAGGACGTCT
CTCCCCACGAGTTCGTCAAGGCCTACGCCGCCCATCTCAAACGCTCCGGC
AAGATTGAGCTTCCTACTTGGAACGACATCGTCAAGACTGGAACGTTGAA
GGAGCTAGCCCCTTATGACCCCGATTGGTACTATATCAGGGCTGCTTCAA
TGGCGAGGAAGATCTACTTTAGGGGTGGTCTTGGTGTTGGTTCCTTCCGT
AGAATCTATGGAGGGGGGAAGAGGAACGGTAGCTGCCCACCTCATTTCAG
CAAGAGCAGTGGCTCTGTTGCTCGTCACATACTTCACCAATTGCAGAACA
CGAACATCATCGAGCTTGACTCCAAGGGTGGAAGGAGAATCACATCCAGT
GGGCAGCGGGATCTTGATCAAGTTGCTGGACGGATTGCAGTTGTTGCCCC
CTTGAGGGATTAGCTCAAGCTTTCAAAAAGGATTGATGTTATTGAGCTAG
TTGTTTGAATGGGAGTAGGAGAAAAAAAGCATCCGCAAGTTTGATTTTCA
GTTCTTCTGGGTAATAACCTAAGAATGAATGGTAAAGGAAATTTCTTTTC
TCCATTTAAAAAAAAAAAAAAAAAAAAAAGGGGGGCCCGCCTCTAAAGAA
TCACACTTTACTAACGCGTGGTATGAGACCCCACAGGATCTCAACCACCT
TCCCACTACTATAAATCCACCA
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