CK937612

Overview
NameCK937612
Unique NameCK937612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.114e-18
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PY++LD+  YDLGI NRDAT+D+VT ++AE+  KYNV +KCATITP
Sbjct:   29 KLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITP 78          

HSP 2 Score: 41.2022 bits (95), Expect = 3.114e-18
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 2
Query:  314 IVEMDGDEMTRIIWQMIKDKVCFTYL 391
            +VEM GDEMTRIIW++IK+K+   Y+
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYV 35          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.114e-18
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PY++LD+  YDLGI NRDAT+D+VT ++AE+  KYNV +KCATITP
Sbjct:   29 KLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITP 78          

HSP 2 Score: 41.2022 bits (95), Expect = 3.114e-18
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 2
Query:  314 IVEMDGDEMTRIIWQMIKDKVCFTYL 391
            +VEM GDEMTRIIW++IK+K+   Y+
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYV 35          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.114e-18
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PY++LD+  YDLGI NRDAT+D+VT ++AE+  KYNV +KCATITP
Sbjct:   29 KLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITP 78          

HSP 2 Score: 41.2022 bits (95), Expect = 3.114e-18
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 2
Query:  314 IVEMDGDEMTRIIWQMIKDKVCFTYL 391
            +VEM GDEMTRIIW++IK+K+   Y+
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYV 35          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.114e-18
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PY++LD+  YDLGI NRDAT+D+VT ++AE+  KYNV +KCATITP
Sbjct:   29 KLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITP 78          

HSP 2 Score: 41.2022 bits (95), Expect = 3.114e-18
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 2
Query:  314 IVEMDGDEMTRIIWQMIKDKVCFTYL 391
            +VEM GDEMTRIIW++IK+K+   Y+
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYV 35          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI P+L+LDIKY+ LG+ +RDATDDKVTVESAE+T KYNVAIKCATITP
Sbjct:   31 KLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITP 80          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.851e-15
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LIFP+LDL ++ YDLGI  RD T+D+VT+++A +  +  V IKCATITP
Sbjct:   30 KLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANAIKRLKVGIKCATITP 79          

HSP 2 Score: 40.4318 bits (93), Expect = 2.851e-15
Identity = 14/35 (40.00%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  287 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKVCFTYL 391
            ++++ V NP+  + GDE TR+IW +I+ K+ F +L
Sbjct:    2 VEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFL 36          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +L+ PYLD+D+KYYDL +  RD T+D+VTV+SA +TLKY VA+KCATITP
Sbjct:   29 KLVLPYLDVDLKYYDLSVEYRDQTNDQVTVDSATATLKYGVAVKCATITP 78          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PYLD+D+KYYDL I  RD T+D+VT +S+ +TLKY VA+KCATITP
Sbjct:   29 KLILPYLDVDLKYYDLSIQERDRTNDQVTKDSSYATLKYGVAVKCATITP 78          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PYLD+D+KYYDL + +RDAT DK+T ++AE+  KY V IKCATITP
Sbjct:   45 KLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITP 94          
BLAST of CK937612 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  480 QLIFPYLDLDIKYYDLGILNRDATDDKVTVESAESTLKYNVAIKCATITP 629
            +LI PYLD+D+KYYDL +  RD T D++T+++A +  +Y V +KCATITP
Sbjct:   29 RLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEYGVGVKCATITP 78          
The following BLAST results are available for this feature:
BLAST of CK937612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_RAT3.114e-1864.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE3.114e-1864.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH3.114e-1864.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME3.114e-1864.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_SOLTU1.323e-1578.00Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_DICDI2.851e-1556.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_YEAST2.759e-1366.00Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDHH_YEAST1.048e-1266.00Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDHP_YEAST1.788e-1264.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA9.813e-1154.00Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937612 ID=CK937612; Name=CK937612; organism=Citrus sinensis; type=EST; length=766bp
GGGGAAGCAGAGTCACGGCGTATTAATTTAAAACGCCTCTTATCATTCCC
AAATGCTCAGGCTCATCAATAGTAGTGGTGGCAGTTTACGATCAAGCGCC
ATGTCACCTGCTGCTGCCACCACCAAAATGATGTCATCGTCAACCGTCGC
CGTTAAAAACCCCAGATGGTCACTCTGTTCTTCAAACAATTCCGGTTTAT
TCAGCGGACATGTGAACAATCGTGTGTCGTTTCGGAACCAGCTGGCTCCT
GCGATGTCGTTTCGGTGTTTTGCTAGTGCCACGGGGATTGATAGAGTCAA
GGTTCAGAATCCTATCGTTGAAATGGACGGCGATGAGATGACGAGGATTA
TTTGGCAGATGATAAAAGACAAAGTATGTTTTACTTATTTACCATAACTT
TCTTATTTTTCTTTTTCCAGAATAACCCTTTTAAAGCACATTGATAAAGT
TTAATGGGAATTAATTGCTTACATTGTTGCAGCTCATATTTCCTTACTTA
GATTTGGATATAAAGTATTATGACCTGGGGATATTGAATCGTGATGCAAC
TGATGACAAGGTTACCGTAGAAAGCGCTGAATCAACTCTAAAGTACAATG
TTGCCATCAAATGTGCCACAATAACTCCTGGTAAGCCATTATCCTTTTGC
AAGCTTTTTAAGCATTTTATTATTTTGGTACCAGAAATAAAAATTTCAGG
CAAGCCGAGTTTTATATAGTGTATGAAATTTTATNNNGCTCTTTACATTA
CATTGCAAGTGGATGG
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