CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 61/195 (31.28%), Postives = 103/195 (52.82%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG          +TP + A     + +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+ +  I  +I       L +     + +++L      EFD   + YS+F SV++ +PT   ++  E
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 60/188 (31.91%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++
Sbjct:    7 LKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +    +LG+               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  E
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 61/192 (31.77%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK+ QKIT AMKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+     EFD   +IY+KF S ++ + T   V+
Sbjct:    3 SLKDIRNRIGSVKSTQKITSAMKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVI 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 59/195 (30.26%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          ++++  ++++GLCG  NS+  ++++   +  +   +  K + +G+K   IL R+ +  I  +I       L +     +A ++L      EFD   + YS+F SV+  +PT   ++  E
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLSGTGADRVHLLLVCTAERGLCGAFNSSIARLARDHARRLTAEGRTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRFRSVIVQIPTAQQIIPAE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SILST (ATP synthase gamma chain OS=Silicibacter sp. (strain TM1040) GN=atpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.504e-17
Identity = 64/198 (32.32%), Postives = 107/198 (54.04%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---------GDTP------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI---ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE++R   + F A++          DT       T   +  ++V +++++GLCGG N+   K+++          K  K + +G+K + +L R+   D+    + +TE+++  + Y     +A DIL      EFD   I YSKF +VV+ +PT   ++  E
Sbjct:    3 SLKDLKNRISSVKNTRKITKAMQMVAAAKLRRAQEAAEDARPYAERFNAVMAGLAASVGQSDTAPKLLAGTGSDQVQLLVVMTAERGLCGGFNANIAKLARQKVLDLQAAGKTVKILTVGKKGRDVLKREF-GDLFVGHVDLTEVKR--VGYVDAQGIAKDILARFDAGEFDVATIFYSKFQNVVTQIPTAQQIIPAE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.504e-17
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  E
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R       A++                   T + +++++V ++S++GL GG NS+ VK+++   +      K+   + +G+K +  L R+        +   +   + Y     +AD+IL    N EFD   + Y++F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPYADRMAAVMAGLTAAAAGSDMAPRLLAGTGEDRRHLLVVMTSERGLAGGFNSSIVKLARLRLQELQAQGKQVSILTVGKKGREQLKREYGDLFVNHVDLSEVKRIGYDNARAIADEILDRFDNGEFDVATLFYNRFESVISQVPTARQVI 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 62/191 (32.46%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI-ELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + +++R+ SVK+ QKITKA +MVAA+KLR  Q  AE +R    P+   L D     A                  +K+++V +++DKGLCGG+NS  VK +K+  K      K+ ++ ++G+K +A + RD +K I +   T   K P  + +   +A+   D+ +  EFD   ++Y  F S +   PT
Sbjct:    3 SLKELKDRIGSVKSTQKITKAKQMVAAAKLRRAQANAEAAR----PYAERLADVMASLAGKVSGDSAPRLLAGSGNDQKHLLVVVNTDKGLCGGLNSNIVKEAKAQAKKLIAAGKDVQFYLVGKKGRAPIKRDYEKQIAKHFDTSTVKQP-GFEEADAIANELIDMFEAGEFDVAHLVYPTFKSALVQDPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS5 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 59/192 (30.73%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +  TA++                   T   K  ++V +++++GLCGG NS+ V+++++         K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPFAERMTAVMTGLAGSVGSSESAPRLLAGTGSDKVQLLVVMTAERGLCGGFNSSIVRLARAHAAKLLAEGKTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDVLDRFDKGEFDVATIFFARFQSVISQIPTAQQVI 194          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_METNO3.863e-1831.28ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_DINSH5.046e-1831.91ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METC48.607e-1831.79ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_RHOCS1.124e-1731.77ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_METS41.124e-1730.26ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_SILST2.504e-1732.32ATP synthase gamma chain OS=Silicibacter sp. (stra... [more]
ATPG_METPB2.504e-1731.28ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_PARDP2.120e-1630.21ATP synthase gamma chain OS=Paracoccus denitrifica... [more]
ATPG_ERYLH2.120e-1632.46ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_RHOS52.769e-1630.73ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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