CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 58/193 (30.05%), Postives = 91/193 (47.15%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK---------AKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     +++V  ++++GLCGG NS   + ++   +      K  K   +G+K            I+ R   ++++ +  E      N   V+     +    EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQAVGSDDGVSTLMTGTGKDDVHLLVVCTAERGLCGGFNSQISRFARDHVRSLLAAGKTVKIYCVGKKGYDSLRREFGALIVERTEFREVKRVAFE------NADTVARKVISMFDKGEFDVCTLFYSEFKSVISQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM9 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9312) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 56/192 (29.17%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   D K   +V I++D+GLCGG N+  +K  +  +        E   +++G+KA           +++ + K++E + T      +      VLA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKRDVKTISLVCITADRGLCGGYNTNIIKKVEIRYAELIKQGYEPNLILVGKKAIGYFQNRKDRYIIKTTFKELEQVPTAKDSEGIT---SEVLAEFLSENA--DRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_DICDI (ATP synthase subunit gamma, mitochondrial OS=Dictyostelium discoideum GN=atp5C1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 52/188 (27.66%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  230 APLGVRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSF 751
            +P   R+++T + ++ R+ +VK I K+TK + MVA+SKLR+ + KAE S         +LG   T DA             K +++ I++D G+CG +N   +K  K+L  L     +E      G K  A +V D      +   +  K   ++ +V +  ++I+  V  +D+  ++Y+KF + +S+
Sbjct:   13 SPANQRNMATLKDLKIRLGTVKTISKLTKTLHMVASSKLRSAEKKAEESGPYSVGPQKVLGVVETADAFNTATEPIEDRSNKQLLIAITTDTGMCGPVNHQIIKTIKAL--LKDDAKQEILVSTTGLKGVAPIVADFPNQFLINGRDFGKADYSFPEVLLFLNEIISKVPNYDSALVVYNKFKNALSY 198          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BARBK (ATP synthase gamma chain OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 55/192 (28.65%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL----GDTPTVDA----------KKNVIVTISSDKGLCGGINSTAVKISKS-LHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R+R+ SVK  QKITKAM+MVAA+KL   Q   E  R   Q   AL+     D   VDA            +++V  ++++GLCG  N+   ++++  + KL++   K  K + +G+K   IL+RD K  +   +       + + + + ++    D+     FD   + YS+F SV++  P   +++
Sbjct:    3 SLKDLRDRIASVKATQKITKAMQMVAAAKLHRAQEAVEAGRSYTQRMDALVTNISKDVDLVDAPLLMRGTGNDHVHLLVVCTAERGLCGAFNTQIARLAREHIQKLHAA-GKTVKILTVGKKGADILLRDFKSLMIDHVDLRSVKKIGFAEAAKISKQLIDLFNEGAFDVCTLFYSRFVSVITQRPMALSLI 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ALKMQ (ATP synthase gamma chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 51/194 (26.29%), Postives = 100/194 (51.55%), Query Frame = 2
Query:  251 ISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVI-LGEKAKAILVRDSKKDIELIITELQKNP--LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            +  Q ++ R+KSV + ++ITKAM++V+++KLR  ++K E +R  ++     + D             TP  + KK   + I++D+GL GG N+  +K +     +N   +KE   +I +G+K +    R    D++   T++ +NP   +   +  L  ++ K    D L ++Y++F S ++  P +  +L  E
Sbjct:    3 VGMQDIKRRIKSVNSTKQITKAMELVSSAKLRKARLKLEKTRPYFKVVEETINDIVSSTQGIRHDLITPR-EVKKTAYIVITADRGLSGGYNANVIKAA-----VNHLQEKERVSIIAIGKKGRGFF-RKRGYDLDGEFTKISENPSFSDAQGIGKLGMELYKQELVDELYLVYTEFVSTITHKPRVVKLLPLE 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_TOBAC (ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 51/187 (27.27%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------TPTVD--------AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN QKIT+AMK+VAA+K+R  Q     +R   +    +L +      T  +D         KK  +V ++ D+GLCGG N+  +K +++  +       +   + +G+K  +  +R     ++  +     N         +ADD+     + E D + ++Y+KF S+V   P + T+L
Sbjct:   60 LRDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDVPLTKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIRDLKALGIDYTIISVGKKGNSYFIRRPYIPVDKFLE--GSNLPTAKDAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVIHTLL 244          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNY3 (ATP synthase gamma chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 51/186 (27.42%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT--------------VDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATV 772
            +R+R++SVKN +KIT+AM++VAA+K+R  Q +  ++R        +L +                  + K   ++ ++ D+GLCGG N  A+K ++   K         K V++G KAK    R    D+      L++ P N ++ + +AD ++    +   D + +IY++F S++S  P + T+
Sbjct:    7 IRDRIQSVKNTKKITEAMRLVAAAKVRRAQEQVLSTRPFADALAQVLYNLQNRLSFAETELPLFEQREPKAVALLVVTGDRGLCGGYNVNAIKRAEQRAKELKNQGIAVKLVLVGSKAKQYFGR-RDYDVAASYANLEQIP-NASEAAQIADSLVALFVSETVDRVELIYTRFVSLISSQPVVQTL 190          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP5 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisA53) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R R+ S K  QKITKAM+MVAASKLR  Q+ AE +R   +   A++ +     A               + ++++  + ++GL G  NS+ V++++          KE K   +G K    L R+  + I   I       L +     +A  ++      EFD   + YS+F SV+S +PT   ++
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQLAAEAARPYAERMDAVISNIAGAAAGSPGAPVLLAGTGKDQVHLLLVCTGERGLSGAFNSSIVRLARERAFALMNQGKEVKIFCVGRKGYEQLRRNFDRQIVENIELRSVRQLGFVNAEDIAAKVIARFDAGEFDVCTLFYSRFKSVISQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM5 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9515) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 55/192 (28.65%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   +V I++D+GLCGG N+  +K  +  +        E   +++G+KA           +++ + K++E + T +    +      VLA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKREVKSISLVCITADRGLCGGYNTNIIKKVEIRYAELIKQGYEPNLILVGKKAIGYFQNRKDKYVIKSTFKELEQVPTAIDSEGITN---EVLAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_NOSP7 (ATP synthase gamma chain OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 52/187 (27.81%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR-----------GLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN +KIT+AM++VAA+++R  Q +   +R           GL         + P +   + K   ++ IS D+GLCGG N+  ++ +++  K         ++V++G K+     R   + I+   + L++ P    + + +AD +L    + E D + +IY++F S+VS  P + T+L
Sbjct:    7 IRDRIQSVKNTKKITEAMRLVAAARVRRAQEQVLATRPFADRLAQVLYGLQSRLRFEEANLPLLRKREVKSVGLLVISGDRGLCGGYNNNVIRRAENRAKEIKAEGLNYQFVLVGRKSTQYFQR-RDQPIDATYSGLEQIP-TAAEANQIADQLLSLFLSEEVDRIELIYTRFLSLVSSRPVVQTLL 191          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_AGRVS3.168e-1230.05ATP synthase gamma chain OS=Agrobacterium vitis (s... [more]
ATPG_PROM94.137e-1229.17ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_DICDI4.137e-1227.66ATP synthase subunit gamma, mitochondrial OS=Dicty... [more]
ATPG_BARBK4.137e-1228.65ATP synthase gamma chain OS=Bartonella bacilliform... [more]
ATPG_ALKMQ4.137e-1226.29ATP synthase gamma chain OS=Alkaliphilus metallire... [more]
ATPG_TOBAC5.403e-1227.27ATP synthase gamma chain, chloroplastic OS=Nicotia... [more]
ATPG_SYNY35.403e-1227.42ATP synthase gamma chain OS=Synechocystis sp. (str... [more]
ATPG_RHOP55.403e-1228.13ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_PROM55.403e-1228.65ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_NOSP75.403e-1227.81ATP synthase gamma chain OS=Nostoc punctiforme (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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