CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_CAUSK (ATP synthase gamma chain OS=Caulobacter sp. (strain K31) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   +   A++ +                T    +++I+  ++D+GL GG  S+ V+ ++   +      K+ K V +G+K+ A L R     I              T    +AD + +  E    D + + YS+F SVV   PT
Sbjct:    3 SLKEMRNRIASVKATQKITKAMQMVAAAKLRRSQDAAEAARPYARRLAAVIANLAAGVTGDGAPPMLAGTGRDDRHLIIVAAADRGLAGGFTSSIVRAARERIETLIAQGKDVKIVCIGKKSTAQLRRLYSDRIVEDFDLSAYRQFTLTVAQPIADVVTRLYEAGDVDVVTLFYSRFKSVVIQTPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BART1 (ATP synthase gamma chain OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 55/189 (29.10%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR----GLWQPFTALLGDTPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP---LNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + +R+R+ SVK  QKITKAM+MVAA++L   Q  A+++R     +    T++  D   VDA            +++V  ++++GLCG  N    + ++   K      K  K + +G+K   IL RD K    L+I  +  +    + + +  V++    D+     FD   + YS+F SV++  PT
Sbjct:    3 SLKDLRDRIASVKATQKITKAMQMVAAARLHRAQEAAQSARPYAKRMADILTSVAADVDGVDAPALMRGTGRDDVHLLVVCTAERGLCGAFNVQIARRAREQIKALLAAGKIVKIITVGKKGADILSRDYK---SLMIDHIDLHAVKRIGFAEALVISQRIVDLFNEGAFDVCTLFYSEFVSVINQRPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_VIBPA (ATP synthase gamma chain OS=Vibrio parahaemolyticus GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 54/186 (29.03%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDK--ENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +RN++ SVK+ QKITKAM+MVAASK+R  Q   E SR   +    ++G                 +AK+   + +S+D+GLCGG+N    K  K++  + +  +K  E +  ++G KA A       K +   ++ L  +P     +  +   + K    E D L ++++KF + +   PT+  +L
Sbjct:    7 IRNKIGSVKSTQKITKAMEMVAASKMRRSQDAMEASRPYAETMRKVIGHVANANLEYRHPYLEEREAKRVGYIIVSTDRGLCGGLNINVFK--KAVTDIQTWKEKGAEIELAVIGSKATAFFKHGGAK-VAAQVSGLGDSPSLEDLIGSVGVMLKKYDEGELDRLYVVFNKFVNTMVQQPTIDQLL 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS3 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9311) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTVDAKKNVIVT---ISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEF-----DALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSVKN +KIT+AM++VAA+K+R  Q +   SR        LL            D P ++ +    +T   ++ D+GLCGG NS  +K ++           +   V++G KA +    +    I+   T L++ P    +   +A +I    EF     D + II++KF ++VS  P + T+L
Sbjct:    7 IRDRIKSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARLLENLQARMRFEDADAPLLEQRAVQTITLMAVTGDRGLCGGYNSNIIKRTEKRFAELQRQGYKVALVLIGRKAISYFT-NRNYPIQATFTGLEQVP-TADEAGSIASEIF--AEFLSETSDRVEIIFTKFINLVSCKPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RICFE (ATP synthase gamma chain OS=Rickettsia felis GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 53/191 (27.75%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA----------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQK--NPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            +R R+KSVK+ QKITKAM++V+ASK+  I+ +  NS    +  + ++ D  ++D                 K N+++ ++S +GLCG  N + +K  K+  K      ++ K +I+G+K    L R     I+    EL K  +     QV       ++N+E     I ++KF + ++ + T   +L  E
Sbjct:    7 LRTRIKSVKSTQKITKAMQLVSASKMAKIKSQIANSNFYIEAISKMMSDILSIDMYELSIEEQKFFNTIPNKANLLIVMASQRGLCGTFNYSIIKQVKNDIKELENKGEQIKLIIIGKKGYEALKRQYANYIDSYF-ELPKIHDENLMLQVKQKIMSAVENLEVSNCVIYFNKFKNAMTQIMTRQQILPIE 196          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RALEH (ATP synthase gamma chain OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 51/189 (26.98%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  257 TQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELII----TELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            T+ +R ++KSV+N +KITKAM+MVAASK+R  Q +  ++R   +    +     T             + K+  ++ +++DKGLCGG+N+  ++   +  K   G   + +   +G K    L R   K I  ++    T   +  +   +V +   D   N E DA+ + Y+KF + +   P +  +L
Sbjct:    4 TKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRSARPYAEKVRNIAAHLATANPEFKHPFMQEREVKRVGMIVVTTDKGLCGGLNTNVLRAVTNELKTLQGRGVDVQATAIGTKGMQFLGRVGAKVISHVVHLGDTPHLEKLIGAIKVQL---DAFTNGEVDAVYLAYTKFINTMKQEPMVEQLL 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_DESAP (ATP synthase gamma chain OS=Desulforudis audaxviator (strain MP104C) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 58/189 (30.69%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  269 RNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKIS-KSLHKLNSGPDKENKYVILGEKAKAIL-VRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            R R+KSVK+ QKI KAMK VA +K+   Q     +R   +    +LG   +             + K+   + I++D+GLCGG NS  ++ + K L K      +E K V +G K +     RD ++D E I   L +N + + Q   +A  ++      E+DA+ ++YSKF +++   PT+  +L  E
Sbjct:    8 RRRIKSVKSTQKICKAMKAVATAKMARAQATVVAARPYARQLHEVLGRVASAARDVQNPLLTVREPKRVCYIVITADRGLCGGFNSNILRTAVKELSKW-----EEFKLVAVGRKCRNFFRFRDWERDAEFI--GLGEN-IRFEQGQQIARFVINKYIAGEYDAVYMVYSKFVNMLVQQPTVVKLLPVE 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_AERHH (ATP synthase gamma chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +RN++ SVKN QKIT AM+MVAASK+R  Q +   SR   +    ++G                 + K+   + +S+D+GLCGG+N    K + +  K  S    +    ++G KA     R   K ++  +  L  NP     +   +V + A D   N E D L ++Y+KF + +   P +  +L
Sbjct:    7 IRNKIGSVKNTQKITGAMEMVAASKMRRAQDRMSASRPYAETMRKVIGHIAQGNLEYKHPYLIEREVKRVGYIVVSTDRGLCGGLNINLFKAALNDMKQWSAKGAKVDLALIGNKASNFFERHGAK-VKAHVAGLGDNPSVNDLIGSVKVMLKAYD---NGEIDRLYLVYNKFVNTMVQQPRVDQLL 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG2_ARATH (ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 62/219 (28.31%), Postives = 105/219 (47.95%), Query Frame = 2
Query:  176 ISPRPIAAIRSPFLSEEDAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL------GDTPTVD--------AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVIL--GEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            ++P  I++ RSP  S +    G+R +     R R+ SVKN QKIT+AM++VAA+++R  Q      R   +    +L           +D         K+  +V ++ DKGLCGG N+   K  K+  ++     +    V++  G+K  A   R  + D++  I      P    +  V+ADD+     + E D + ++Y+KF S+V   P + T+L
Sbjct:   43 LTPNRISS-RSPLPSIQ-IRAGIREL-----RERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQLEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTK--KATLRVQELKQRGIDCVVISVGKKGNAYFSRRDEFDVDKCIEGGGVFPTT-KEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLL 251          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_DESOH (ATP synthase gamma chain OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK--AILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL----KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + V+ ++K VK  +KITKAM MVA SKLR  Q   E  R   + F  +LG               P    K+  +V  +SD+GLCGG N+  V+++ +  K     + E  +   G+K +     + D ++  E +     +   N   V+V A   L     N ++D + +IYS+F  +   LP +  +L
Sbjct:    3 SLKEVQLKIKGVKQTKKITKAMNMVATSKLRGAQTNMEAFRPYAEKFAEVLGSLAAKAGEETSPLLVPKESVKRVNVVLCTSDRGLCGGFNTNLVRMANAYLKRCQEKEIEVSFTHFGKKGRDWCRKMTDCERKSEYLGVVGARFGFN---VAVTAGRELINGFLNGDYDEVHVIYSEFQGMAKQLPVIRQLL 192          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_CAUSK1.572e-1130.65ATP synthase gamma chain OS=Caulobacter sp. (strai... [more]
ATPG_BART11.572e-1129.10ATP synthase gamma chain OS=Bartonella tribocorum ... [more]
ATPG_VIBPA2.053e-1129.03ATP synthase gamma chain OS=Vibrio parahaemolyticu... [more]
ATPG_SYNS32.053e-1129.63ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_RICFE2.053e-1127.75ATP synthase gamma chain OS=Rickettsia felis GN=at... [more]
ATPG_RALEH2.053e-1126.98ATP synthase gamma chain OS=Ralstonia eutropha (st... [more]
ATPG_DESAP2.053e-1130.69ATP synthase gamma chain OS=Desulforudis audaxviat... [more]
ATPG_AERHH2.053e-1129.41ATP synthase gamma chain OS=Aeromonas hydrophila s... [more]
ATPG2_ARATH2.053e-1128.31ATP synthase gamma chain 2, chloroplastic OS=Arabi... [more]
ATPG_DESOH2.682e-1129.02ATP synthase gamma chain OS=Desulfococcus oleovora... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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