CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 51/187 (27.27%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTVD---AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ +VKN +KIT+AM++VAA+K+R  Q +   +R        +L            + P +     +K  ++ ++ D+GLCG  NS+ +K ++           +  +V++G KA     R   + IE     L++ P    + S +AD++L    + E D + +IY++F S+V+  P + T+L
Sbjct:    7 IRDRISTVKNTKKITEAMRLVAAAKVRRAQEQVTATRPFADRLAQVLYGLQARLKFEEVELPLLQERALRKVCLLVVTGDRGLCGAYNSSVIKRAEERSNELKAKGIDYTFVLVGRKAIQYFQR-RDQPIEATYGGLEQIP-TAQEASEIADELLSLYLSEEVDHVELIYTRFISLVNSRPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROMS (ATP synthase gamma chain OS=Prochlorococcus marinus (strain AS9601) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPL----NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   +V I++D+GLCGG N+  +K  +  +        +   +++G+KA      R  +  I+    EL++ P           +LA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKREVKSISLVCITADRGLCGGYNTNIIKKVEIRYAELVKQGYQPNLILVGKKAIGYFQNRKDRYAIKSTFKELEQVPTVKDSEGVTNEILAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM2 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9215) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 53/192 (27.60%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   +V I++D+GLCGG N+  +K  +  +        +   +++G+KA           +++ + K++E + T      +      +LA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKREVKSISLVCITADRGLCGGYNTNIIKKVEIRYAELVKQGFQPNLILVGKKAIGFFQNRKDRYVIKSTFKELEQVPTVKDSEGITN---EILAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM0 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9301) GN=atpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 53/192 (27.60%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   +V I++D+GLCGG N+  +K  +  +        +   +++G+KA           +++ + K++E + T      +      +LA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKREVKSISLVCITADRGLCGGYNTNIIKKVEIRYAELVKQGYQPNLILVGKKAIGYFQNRKDRYVIKSTFKELEQVPTVKDSEGVTN---EILAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ODOSI (ATP synthase gamma chain, chloroplastic OS=Odontella sinensis GN=ATPC PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 52/187 (27.81%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT AMK+VAA+K+R  Q     +R   +   ++ G           D P +   +  K  +V I+ D+GLCGG NS  +K +++              V++G+K      R      +    E  +NP +  Q   +++++L      E DA+ ++Y+KF S+++  P+  T++
Sbjct:   62 IRDRITSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARMGGEALDLPLLTQREVSKVTLVVITGDRGLCGGYNSFMIKKAEARFNELKDQGVACDMVLIGKKGITYFQRRGYPIRKTF--ETGQNP-DSKQALAISEELLNTYLSGESDAVELLYTKFISLIASSPSARTLI 245          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_ACAM15.974e-1127.27ATP synthase gamma chain OS=Acaryochloris marina (... [more]
ATPG_PROMS7.803e-1129.10ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM27.803e-1127.60ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM07.803e-1127.60ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_ODOSI7.803e-1127.81ATP synthase gamma chain, chloroplastic OS=Odontel... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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