CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:12..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 58/182 (31.87%), Postives = 92/182 (50.55%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLP 757
            ++ R+ SVK+ QKITKAMKMVAA+KLR  Q  AE  R   +    ++ +               + T + K ++ + ++SD+GLCGG N+  +K +K+  +  S   K  K + +G K    L R  K  I   I+      +NY     +   I++N    EFD   I Y+KF +V++ +P
Sbjct:    7 LKKRIASVKSTQKITKAMKMVAAAKLRRAQENAEKGRPYSEKMNNIILNLSSGISDKENAPKLLSGTGEDKVHLCIVLTSDRGLCGGFNTNIIKKAKTYFQKISDEGKTLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFEKEEFDVCTIFYNKFKNVITQIP 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PARL1 (ATP synthase gamma chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL----------GDTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQ---VSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   +    +L           D P + A     + ++++  ++D+GLCGG NS+ V++++       G  K  K + +G K +  L RD    I           + + Q   +S    D+ +  EFD   I YSKF +VVS +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYAERMDRVLANLATGMTGRSDAPALLAGTGSDQVHLVIVATADRGLCGGFNSSIVRLARQHINKLVGEGKTVKILTVGRKGRDALKRDHASRIVKSYEFTGIRHIGFEQAEDISRTVIDLFEAGEFDVATIFYSKFVNVVSQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHORU (ATP synthase gamma chain OS=Rhodospirillum rubrum GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYT---QVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +  L R+  K I   I +     + ++   + S L  D+ +  EFD   ++Y++F S +S + T   ++
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHORT (ATP synthase gamma chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYT---QVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +  L R+  K I   I +     + ++   + S L  D+ +  EFD   ++Y++F S +S + T   ++
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 56/188 (29.79%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKK---------------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            ++NR+ SVK+ +KITKAM+MVAA+KLR  Q  AE +R   +   A++    +                    +++V +++++GLCGG NST V+ ++   +   G  K  K + +G+K +  L RD    +   +       L Y   + +A D+L      EFD   I +++F SV+S +PT   ++
Sbjct:    7 LKNRIASVKSTRKITKAMQMVAAAKLRRAQEAAEMARPYAEKMEAVMSGLASAVGNSEGAPRLLAGNGKDQVHLLVVMTAERGLCGGFNSTIVRKARVHAQKLLGEGKTIKILTVGKKGREQLRRDYADHLIGHVDLSDVKRLGYADAASIATDVLNRFEEDEFDVATIFFNRFESVISQIPTATQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_AZOC5 (ATP synthase gamma chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpG PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 61/192 (31.77%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q+ AE +R   +   ++LG          DTP     T   +K++++  +S++GLCG  N+  V+  +    L  G  K+ K+  +G K    L R     I  ++       L +     +A+ I+      EFD   + +S F SV+S +PT   ++
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDSVLGNIASGVTLSADTPLLLSGTGKDEKHLLLVCTSERGLCGAFNTNIVRAVRERANLLIGQGKDVKFFCVGRKGYDQLRRLYPGQIVELVDLRSVRNLGFVNAHDIAEKIIDRFNKGEFDVCTLFFSHFKSVISQVPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SILPO (ATP synthase gamma chain OS=Silicibacter pomeroyi GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 57/188 (30.32%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            ++NR+ SVK+ +KITKAM+MVAA+KLR  Q  AE +R   + F A++                   T   + +++V +++++GLCGG NS   K+++          K  K + +G+K +  + RD   ++   +       L Y     +A D+L      EFD   I Y+KF +VV+ LPT   ++
Sbjct:    7 LKNRIASVKSTRKITKAMQMVAAAKLRRAQESAEAARPYAERFNAVMAGLAASVGGSDSAPLLLRGTGSDQVHLLVVMTAERGLCGGFNSNIAKLARVRANELLAKGKTVKILTVGKKGRDAMKRDFAANMVGHVDLSGIKALGYANAQDIARDVLGRFDAGEFDVATIFYAKFQNVVTQLPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOSK (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 59/192 (30.73%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +  TA++                   T   K +++V +++++GLCGG NS+ V+++++         K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPFAERMTAVMTGLAGSVGSSESAPRLLAGTGSDKVHLLVVMTAERGLCGGFNSSIVRLARAHAAKLLTQGKTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVISQVPTAQQVI 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS1 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 59/192 (30.73%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +  TA++                   T   K +++V +++++GLCGG NS+ V+++++         K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPFAERMTAVMTGLAGSVGSSESAPRLLAGTGSDKVHLLVVMTAERGLCGGFNSSIVRLARAHAAKLLTQGKTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVISQVPTAQQVI 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_XANP2 (ATP synthase gamma chain OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 57/192 (29.69%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q+ AE +R   +    +LG+                 T  ++K++++  + ++GLCG  N++ V++++   +   G  K+  +  +G K    L R     I  ++       L++   S +A  IL  ++   FD   + YS F SV+S +PT   ++
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDTVLGNLAAGIVGAGQAPVLIAGTGQSQKHLLLVCTGERGLCGAFNTSIVRLAREKAQQLIGEGKDVTFFCVGRKGYDQLRRTYPDRIIELVDLRSVRTLSFKNASDIASKILTLLDQGAFDVCTLFYSNFKSVISQIPTAQQII 194          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_PELUB2.769e-1631.87ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_PARL12.769e-1633.69ATP synthase gamma chain OS=Parvibaculum lavamenti... [more]
ATPG_RHORU3.616e-1631.25ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_RHORT3.616e-1631.25ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_JANSC3.616e-1629.79ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_AZOC53.616e-1631.77ATP synthase gamma chain OS=Azorhizobium caulinoda... [more]
ATPG_SILPO6.168e-1630.32ATP synthase gamma chain OS=Silicibacter pomeroyi ... [more]
ATPG_RHOSK6.168e-1630.73ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS16.168e-1630.73ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_XANP21.052e-1529.69ATP synthase gamma chain OS=Xanthobacter autotroph... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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