CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHILO (ATP synthase gamma chain OS=Rhizobium loti GN=atpG PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL----------GDTP---TVDAKKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   +   ++L          GD P   T   K NV  +V  ++++GLCGG NS   ++++   +      K+ K + +G+K   IL RD    I   +   +   L +     +A  ++       FD   + YS+F SV+S +PT   ++
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSERMGSVLANITQAIGGGGDAPALMTGTGKDNVHLLVVCTAERGLCGGFNSQIARLARDHIRRLLADGKQVKIICVGKKGFDILRRDYASMILDRVDLREVKTLGFVNADAIAKKVIHLFNEGAFDICTLFYSQFKSVISQVPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS4 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +  TA++                   T   K +++V +++++GLCGG NS+ V+++++         K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV++ +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPFAERMTAVMTGLAGSVGSSESAPRLLAGTGSDKVHLLVVMTAERGLCGGFNSSIVRLARAHAAKLLTQGKTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVINQVPTAQQVI 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 61/194 (31.44%), Postives = 102/194 (52.58%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIIT-ELQKNP--LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  A+N+R   Q   +++ +                T   +++++V  +SD+GL GG NS  V+ ++      S   K+ + + +G KA+  L R + +   L+ T E   NP      +VS    ++ +  E D + +++S F SVV+  PT+  ++  E
Sbjct:    3 SLKEMRNRIGSVKATQKITKAMQMVAAAKLRKAQDAAQNARPYAQRMASVIANLAAGVSGDGAPKLLAGTGSDRRHLVVVATSDRGLAGGFNSAIVRAARERINALSAEGKDVRVITIGRKARDQLRRLAGE--RLVATYEAGSNPSLAVAEEVSARIQEMFEAGEVDVVHLVFSSFKSVVTQQPTVRQLIPAE 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOBL (ATP synthase gamma chain OS=Rhodopseudomonas blastica GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 58/190 (30.53%), Postives = 98/190 (51.58%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +   A++    +                + +++V ++S++GLCGG NST V++++          K  K + +G+K +  L RD        +       L Y+    +A ++L   +  E D + I Y++F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQDSAEAARPYAERMGAVIASLASGQGAGAPRLLAGNGRDQIHLLVVMTSERGLCGGFNSTIVRLARQRANELVAQGKTVKILTVGKKGREQLKRDWASAFVGHVDLSDVRRLGYSNAQGIAREVLAAFEAGEADVVTIFYNRFQSVISQVPTAQQVI 192          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 62/186 (33.33%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTPTV---DAKKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P +     K NV  +V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDNVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_AGRT5 (ATP synthase gamma chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 61/192 (31.77%), Postives = 96/192 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK---------AKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q  +A+L +              T T     +++V  ++++GLCGG NS   + ++   +      K  K + +G+K         A  I+ R   +D++ +  E      N  Q++     +    EFD   +IYS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMSAVLANIATAVEADVAPALMTGTGKDDVHLLVVCTAERGLCGGFNSQIARFARDQARKLISEGKTVKIITVGKKGYDSLRREFASLIIERIELRDVKKVGFE------NADQIAKKVISLFNAGEFDVCTLIYSEFKSVISQIPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ACICJ (ATP synthase gamma chain OS=Acidiphilium cryptum (strain JF-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 54/187 (28.88%), Postives = 99/187 (52.94%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-------DTPTVDA--------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK+ QKITKAMKMVAA+KLR  Q +AE +R       A++G       + P   A        + ++IV +S+D+GL G  N++  + +++  +      K+ +   +G K +    RD ++ I      + K  + +     +A+ I+    + +FD   +++++F SV+S +P+
Sbjct:    3 SLKALRNRIASVKSTQKITKAMKMVAAAKLRRAQAQAEAARPYATRMAAMMGALAEGAAENPNAPALLVGNGADRTHLIVVVSADRGLAGPFNASINRAARARARKLEAEGKQVRLFTVGRKGRDFFRRDMREKIIGEANFVGKKTIEFADAEAIANQIIAAFNDGKFDVCTLMFNRFVSVMSQVPS 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 54/170 (31.76%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  260 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQ--VKAENSRGLW-QPFTALLGDTPTVDAK-KNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKEN-KYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK-NVEFDALRIIYSKFHSVVSF 751
            +++  R+KSVKNIQKIT++MKMV+A+K    +  +KA    G+  Q F       P   A+ K +++ ++SD+GLCG +++   ++ +         D+ N K   +G+K++AIL R   K+I ++  E+ + P  +   S +A+++L+   ++   +I+Y++F SVVS+
Sbjct:   30 KMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRG----ELAQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSY 195          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SINMW (ATP synthase gamma chain OS=Sinorhizobium medicae (strain WSM419) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 61/187 (32.62%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     +++V  ++++GLCGG NS   + ++   +      K  K + +G+K   IL R+    I   + + E++K    N  ++     ++  N EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMAAVLSNIAQAVGADDSAPRLMTGTGKDDTHLLVVCTAERGLCGGFNSQIARHARDHVRKLLAQGKTVKIICVGKKGFDILRREFASLIIDRVDLREVKKIGFENADRIGHKVIELFDNGEFDVCTLFYSEFKSVISQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_MESSB (ATP synthase gamma chain OS=Mesorhizobium sp. (strain BNC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 58/191 (30.37%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---------GDTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   +   A+L          D P + A       +++V  ++D+GL G  NS   ++++   +      ++ K + +G+K   +L RD  K +   I   +   + +     +A  ++   +  EFD   +IYS+F SV+S +PT   ++
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYAERMDAVLANVSASISGADAPPLMAGTGKDDVHLVVVCTADRGLAGSFNSQIARLAREHIRKLQANGRQVKIITVGKKGYDLLRRDFGKLVIDRIELREVKQIGFANADAIAKKVIGLFEAGEFDVCTLIYSRFKSVISQIPTEQQII 193          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_RHILO1.052e-1532.29ATP synthase gamma chain OS=Rhizobium loti GN=atpG... [more]
ATPG_RHOS41.374e-1530.21ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_PHEZH1.374e-1531.44ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_RHOBL1.795e-1530.53ATP synthase gamma chain OS=Rhodopseudomonas blast... [more]
ATPG_BRUC21.795e-1533.33ATP synthase gamma chain OS=Brucella canis (strain... [more]
ATPG_AGRT51.795e-1531.77ATP synthase gamma chain OS=Agrobacterium tumefaci... [more]
ATPG_ACICJ3.061e-1528.88ATP synthase gamma chain OS=Acidiphilium cryptum (... [more]
ATPG_DROME3.998e-1531.76ATP synthase subunit gamma, mitochondrial OS=Droso... [more]
ATPG_SINMW5.222e-1532.62ATP synthase gamma chain OS=Sinorhizobium medicae ... [more]
ATPG_MESSB5.222e-1530.37ATP synthase gamma chain OS=Mesorhizobium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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