CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_GRABC (ATP synthase gamma chain OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.222e-15
Identity = 62/186 (33.33%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR---GLWQPFTALLGD------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLP 757
            S + +R R+ SVK+ QKIT AMKMVAASKLR  Q  AE +R    L Q   A L D              T   K +++V IS+D+GL G  N+   + +++L        K  K + +G KA+  L RD +  +    +   K  L +     L+  I   +   EFD   ++Y+ F+SV+S  P
Sbjct:    3 SLKALRGRITSVKSTQKITSAMKMVAASKLRRAQQAAEAARPYAELMQRMLAALADNVAGSPSAPRILVGTGQDKVHLLVVISADRGLAGAFNTNVGRAARTLANRLESEGKTVKILTVGRKARDYLRRDLETRLLPETSLAGKKVLAFADALALSQQITARLDAGEFDVCTLVYNHFNSVISQTP 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_OCHA4 (ATP synthase gamma chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 59/191 (30.89%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYT---QVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P + A       +++V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    I   +   +   L +    Q+     ++ +  EFD   + YS+F SV++ +PT   ++
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVTGEDAPALMAGTGKDDVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFASLIIDHVNLREVKQLAFVHADQIGHKVIELFEQGEFDVCTLFYSEFKSVIAQIPTAQQII 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSU (ATP synthase gamma chain OS=Brucella suis GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 60/186 (32.26%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSI (ATP synthase gamma chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 60/186 (32.26%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUO2 (ATP synthase gamma chain OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 60/186 (32.26%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++++GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAERGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BEII9 (ATP synthase gamma chain OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 54/187 (28.88%), Postives = 97/187 (51.87%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV-----DAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVA++KLR  Q+ AE +R   +    +L    ++     DA K          +++V  ++++GLCGG N++  ++++   +      K+ K + +G+K   +L R   + I  +I       + +     +   IL   K+ EFD   + ++KF +V+  +PT
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVASAKLRRAQLAAEAARPYAERMDEVLASLASIVGTGPDAPKLLAGNGYDRTHLLVVCTAERGLCGGFNASIARLARDTAEKLIAEGKKVKILCVGKKGYDLLKRQFGEQILELIELRSVRTIGFVNAEAIGRKILNLYKDAEFDVCTLFFAKFRTVLHQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHISN (ATP synthase gamma chain OS=Rhizobium sp. (strain NGR234) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     +++V  ++++GLCGG NS   + ++   +      K  K + +G+K   IL R+    I   + + E++K    N  ++     ++ +  EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMAAVLANIAQAVGADDSAPALMTGTGRDNTHLLVVCTAERGLCGGFNSQIARFARDHVRKLLAQGKTVKIICVGKKGFDILRREFASLIIDRVDLREVKKIGFENADRIGHKVIELFEKGEFDVCTLFYSEFKSVISQVPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BDEBA (ATP synthase gamma chain OS=Bdellovibrio bacteriovorus GN=atpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 55/189 (29.10%), Postives = 102/189 (53.97%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT--------PTVDAKKNV----IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R +++S KN Q+ITKAMK+V+A+KLR  Q    N R        ++ D         P ++ K+ V    +V I+SD+GLCG  NS   K +++ +  N    ++  ++ +G +      R   K ++  IT+L K+ ++Y   S +A+ ++ +     +D +RI++++F S +S + T  T+L
Sbjct:    3 SLKDIRAQIESTKNTQQITKAMKLVSAAKLRKAQNNIVNMRPYALALRQVIADIAVTNKVSHPLMEKKEQVKNVLLVVITSDRGLCGAFNSNINKFAEAYYNSNKASLEKIDFLFVGRRGHDYFARRGIKAVD-YITKLDKD-ISYELASKVANRVMNDYLEGSYDEVRIVHNEFKSAISQVVTAETLL 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNE7 (ATP synthase gamma chain OS=Synechococcus elongatus (strain PCC 7942) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 57/187 (30.48%), Postives = 103/187 (55.08%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR-----------GLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSV+N +KIT+AM++VAA+K+R  Q +  ++R           GL Q       D P +   + K   ++ +S D+GLCGG NS  ++ ++   +  S    + K+VI+G KA     R  ++ IE   + L++ P    + + +AD++L    +   D + ++Y+KF S+V+  P + T+L
Sbjct:    7 IRDRIKSVRNTRKITEAMRLVAAAKVRRAQEQVLSTRPFADRLAQVLAGLQQRLQFENVDLPLLQRREVKTVALLVVSGDRGLCGGYNSNVIRRAEQRARELSAQGLDYKFVIVGRKAGQYFQR-REQPIEATYSGLEQIP-TAQEANDIADELLSLFLSGTVDRVELVYTKFLSLVASNPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHIME (ATP synthase gamma chain OS=Rhizobium meliloti GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.163e-14
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T     ++++  ++++GLCGG NS   + ++   +      K  K + +G+K   +L RD    I   + + E++K    N  ++     ++    EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMAAVLANIAQAVGADDSAPRLMTGTGRDDTHLVIVCTAERGLCGGFNSQIARFARDHVRKLLAQGKTVKIICVGKKGFDMLRRDFASLIIDRVDLREVKKIGFENADRIGHKVIELFDKGEFDVCTLFYSEFKSVISQIPT 189          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_GRABC5.222e-1533.33ATP synthase gamma chain OS=Granulibacter bethesde... [more]
ATPG_OCHA46.820e-1530.89ATP synthase gamma chain OS=Ochrobactrum anthropi ... [more]
ATPG_BRUSU6.820e-1532.26ATP synthase gamma chain OS=Brucella suis GN=atpG ... [more]
ATPG_BRUSI6.820e-1532.26ATP synthase gamma chain OS=Brucella suis (strain ... [more]
ATPG_BRUO26.820e-1532.26ATP synthase gamma chain OS=Brucella ovis (strain ... [more]
ATPG_BEII96.820e-1528.88ATP synthase gamma chain OS=Beijerinckia indica su... [more]
ATPG_RHISN8.907e-1532.09ATP synthase gamma chain OS=Rhizobium sp. (strain ... [more]
ATPG_BDEBA8.907e-1529.10ATP synthase gamma chain OS=Bdellovibrio bacteriov... [more]
ATPG_SYNE71.163e-1430.48ATP synthase gamma chain OS=Synechococcus elongatu... [more]
ATPG_RHIME1.163e-1431.55ATP synthase gamma chain OS=Rhizobium meliloti GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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