CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SCHPO (ATP synthase subunit gamma, mitochondrial OS=Schizosaccharomyces pombe GN=atp3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 54/170 (31.76%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--TPTVDAKKNVIVTISSDKGLCGGINSTAVK-ISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSFLPTM 763
            +  R+KS+KNI+KITK +K VA +KL   Q   E S   ++    +  +  T   +  K ++V  SSDKGLCGGI+S+  + I + LH  +    +     ILGEK +  L+R   +   L    +     ++ +   ++ +IL++  ++D + ++Y+KF S VSF   M
Sbjct:   37 IEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEGKTLMVACSSDKGLCGGIHSSISRLIRRELH--DPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVM 204          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHILW (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK---------AKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T   + +++V  ++++GLCGG NS   + ++   +      K  K   +G+K         A  I+ R   +D++ I  E      N  Q+     D+    EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAKAVTDADGAPTLMTGTGKDQVHLLVVCTAERGLCGGFNSQIARFARDHVRKLVAEGKTVKIFTVGKKGYDILRREYASLIIERKELRDVKRIGFE------NADQIGKRIIDMYAAGEFDVCTLFYSEFKSVISQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP6 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.984e-14
Identity = 57/187 (30.48%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR-----------GLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSV+N +KIT+AM++VAA+K+R  Q +  ++R           GL Q       D P +   + K   ++ +S D+GLCGG NS  ++ ++   +  S    + K+VI+G KA     R  ++ IE   + L++ P    + + +AD +L    +   D + ++Y+KF S+V+  P + T+L
Sbjct:    7 IRDRIKSVRNTRKITEAMRLVAAAKVRRAQEQVLSTRPFADRLAQVLAGLQQRLQFENVDLPLLQRREVKTVALLVVSGDRGLCGGYNSNVIRRAEQRARELSAQGLDYKFVIVGRKAGQYFQR-REQPIEATYSGLEQIP-TAQEANDIADQLLSLFLSGTVDRVELVYTKFLSLVASNPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_NOVAD (ATP synthase gamma chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 54/193 (27.98%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIEL-IITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++ R+ SVK+ QKITKA +MVAA+KLR  Q  AE +R        ++G                  T   +++++V +++DKGLCGG+NS  +K +K   +      K   + ++G+K +A + RD    I     T L + P  + + + +A ++L   E   FD   ++  +F + ++ LP    ++
Sbjct:    3 SLKELKGRINSVKSTQKITKAKQMVAAAKLRKAQAAAEAARPYASRLAEVMGSLAAKVAGQDNGPLLMRGTGSNQRHLLVVVNTDKGLCGGLNSNIIKEAKLQARALEAAGKTVTFYLVGKKGRAPIRRDYPNGIAAGYDTSLVRTP-GFDEAAAIAQELLALFEAGKFDVAHLVAPEFKNALTQLPVTTQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHIL3 (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK---------AKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T   + +++V  ++++GLCGG NS   + ++   +      K  K   +G+K         A  I+ R   +D++ +  E      N  Q+     ++    EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAKAVTDADGAPTLMTGTGQDQVHLLVVCTAERGLCGGFNSQIARFAREHVRKLVAEGKTVKIFTVGKKGYDILRREFASLIIERKELRDVKRVGFE------NADQIGKRIIEMYAAGEFDVCTLFYSEFKSVISQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROMM (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9313) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTP---TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D P   T D K   ++ ++ D+GLCGG NS  +K ++  +   +G   +   V++G KA      R S+  I    T L++ P +    S+  + + +  +   D + +IY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARVLENIQSRMSFEMADAPLLKTSDLKTITLLAVTGDRGLCGGYNSNIIKRTEQRYAELNGQGYKVDLVLIGRKAITYFSNRSSQYTIRATFTGLEQVPTSDDAESITTEVLAEFLSQSTDRIEVIYTKFINLVSCNPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM3 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9303) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTP---TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D P   T D K   ++ ++ D+GLCGG NS  +K ++  +   +G   +   V++G KA      R S+  I    T L++ P +    S+  + + +  +   D + +IY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARVLENIQSRMSFEMADAPLLKTSDLKTITLLAVTGDRGLCGGYNSNIIKRTEQRYAELNGQGYKVDLVLIGRKAITYFSNRSSQYTIRATFTGLEQVPTSDDAESITTEVLAEFLSQSTDRIEVIYTKFINLVSCNPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_HYPNA (ATP synthase gamma chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 54/188 (28.72%), Postives = 102/188 (54.26%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPLNYTQVSVLADDIL----KNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK+ QKITKAM++VAA+KL+  Q  A  +R   +   A+L +             T     + +++V +++++GL GG N+   K+++   +      K  K + +G+K + +L R+        + +++++ N  N+T  S+    +L    +N EFD   +IYS+F +V+S +PT
Sbjct:    3 SLKDLKNRIGSVKSTQKITKAMQLVAAAKLKRAQEAATAARPYAERLAAVLANLAATTGQGGPKLLTGNGTDQTHLLVVMTAERGLAGGFNAYVAKLARLKIQQLQSEGKTVKVLTIGKKGREVLAREHSALFTGHVNLSDVKSN--NFTDASLSVGQMLTKGFENGEFDVATLIYSQFKNVLSQVPT 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_GLOVI (ATP synthase gamma chain OS=Gloeobacter violaceus GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 56/187 (29.95%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSVKN QKITKAM++VAA+++R  Q +    R        LL             +P +   D +K +++ I+ D+GLCG  NS  ++ +    +      K+    ++G KA +   R S   I   +T +  N        ++ DDIL    + E+D + ++Y++F S++S  PT+ T+L
Sbjct:    7 IRDRIKSVKNTQKITKAMRLVAAARVRRAQEQVLAGRPFADRLVGLLFRLRSRLRFEDVQSPLMERRDVQKVLVLVIAGDRGLCGAYNSNIIRRTVQYLRELQQQGKQFALYLVGNKAISFF-RRSNFPIAKTLTNVDPNTPLEGANQLITDDILAPFLSGEYDQVELVYTRFVSLISSRPTVQTLL 192          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCA (ATP synthase gamma chain OS=Rhodobacter capsulatus GN=atpG PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 58/192 (30.21%), Postives = 96/192 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++NR+ SVKN +KITKAM+MVAA+ +R  Q  AE +R   +   A++       G T         T   K +++V ++ ++GLCGG N+   K++K+         K  K + +G+K +  L RD  +     I       L+Y     ++ +I+      E+D   I +S F SV+S +PT   V+
Sbjct:    3 SLKDLKNRIVSVKNTRKITKAMQMVAAANIRRAQESAEAARPYAERMNAVMSSLAGAVGSTDGAPRLLAGTGSDKVHLLVIMTGERGLCGGFNANIAKLAKAKAMELLAQGKTVKILTVGKKGRDALRRDLGQYYIDHIDLSDVKKLSYPVAQKISQNIIDRFEAGEYDVATIFFSVFQSVISQVPTAKQVI 194          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_SCHPO1.519e-1431.76ATP synthase subunit gamma, mitochondrial OS=Schiz... [more]
ATPG_RHILW1.519e-1432.12ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_SYNP61.984e-1430.48ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_NOVAD2.591e-1427.98ATP synthase gamma chain OS=Novosphingobium aromat... [more]
ATPG_RHIL34.420e-1431.09ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_PROMM4.420e-1429.95ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM34.420e-1429.95ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_HYPNA5.773e-1428.72ATP synthase gamma chain OS=Hyphomonas neptunium (... [more]
ATPG_GLOVI5.773e-1429.95ATP synthase gamma chain OS=Gloeobacter violaceus ... [more]
ATPG_RHOCA7.540e-1430.21ATP synthase gamma chain OS=Rhodobacter capsulatus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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