CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHIE6 (ATP synthase gamma chain OS=Rhizobium etli (strain CIAT 652) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q    +L +               T T   + +++V  ++++GLCGG NS   + ++   +      K  K   +G+K   IL R+    I     + E++K    N  Q+     ++ +  EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMNTVLANIAKAVTDADGAPVLMTGTGKDQVHLLVVCTAERGLCGGFNSQIARFARDHVRKLVAEGKTVKIFTVGKKGYDILRREFASLIVERKELREVKKIGFENADQIGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 54/187 (28.88%), Postives = 98/187 (52.41%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   ++ ++ D+GLCGG N+  +K ++  +    G       V++G+KA      R S  +I     EL++ P +    S+ ++ + +  +   D + +I++KF S+VS  PT+ T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLRSRPFADRLARVLENIQSRMQFEAADSPLLNKREVKTITLLAVTGDRGLCGGYNANIIKRTEKRYAELKGQGYSPDLVLIGKKAIGYFENRSSLYNIRATFKELEQVPTSEDAASITSEVLAEFLSESTDRVEVIFTKFVSLVSCNPTIQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_MAGSA (ATP synthase gamma chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 56/183 (30.60%), Postives = 93/183 (50.82%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDI---LKNVEFDALRIIYSKFHSVVS 748
            S + +R ++ SVK+ +KIT AMKMVAASKLR  Q  AE +R   +    +LG                + T   K +++V +++D+GLCGG NS+ V+ +K++        K  K + +G KA+  L RD  + +      L +  + + +   +A  I       EFD   ++Y+KF S ++
Sbjct:    3 SLKDLRMKIVSVKSTRKITSAMKMVAASKLRRAQTAAEAARPFAERMERMLGTLAASLAGQSGAPRMISGTGFDKVHLLVAVTADRGLCGGFNSSIVRATKAMAADLLKQGKTIKIMPVGRKAREQLRRDYGQYMIEGFENLGRKGIVFAEADQVASQISAMFDAEEFDVCTVVYNKFKSAIA 185          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 54/187 (28.88%), Postives = 98/187 (52.41%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN QKIT+AM++VAA+K+R  Q +   +R        +L            + P +   + KK  ++ +S D+GLCG  N+  +K +    K       +  +V++G KA     R  ++ I+   T L++ P    + S +AD++L    +   D + ++Y+KF S++S  P + T+L
Sbjct:    7 IRDRIQSVKNTQKITEAMRLVAAAKVRRAQEQVIATRPFADRLAQVLYGLQARLRFEEANLPLLRRREVKKVALLVVSGDRGLCGAYNTNVIKRAAERSKELKAEGIDYTFVLVGRKAIQYFQR-REQPIDATYTGLEQVP-TAAEASQIADELLSLFLSESVDRVELVYTKFVSLISSRPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 54/187 (28.88%), Postives = 97/187 (51.87%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   ++ ++ D+GLCGG N+  +K ++  +    G       V++G+KA      R S   I     EL++ P +    S+ ++ + +  +   D + +I++KF S+VS  PT+ T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLRSRPFADRLARVLENIQSRMQFEAADSPLLNKREVKTITLLAVTGDRGLCGGYNANIIKRTEKRYAELKGQGYSPDLVLIGKKAIGYFENRSSLYKIRATFKELEQVPTSEDAASITSEVLAEFLSESTDRVEVIFTKFVSLVSCNPTIQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUME (ATP synthase gamma chain OS=Brucella melitensis GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 59/186 (31.72%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++ +GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAKRGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUMB (ATP synthase gamma chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 59/186 (31.72%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++ +GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAKRGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUAB (ATP synthase gamma chain OS=Brucella abortus GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 59/186 (31.72%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++ +GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAKRGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA2 (ATP synthase gamma chain OS=Brucella abortus (strain 2308) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 59/186 (31.72%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++ +GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAKRGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA1 (ATP synthase gamma chain OS=Brucella abortus (strain S19) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 59/186 (31.72%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG---------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPT 760
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AE +R   Q   A+L          D P     T     +++V  ++ +GLCGG NS   ++++   +      K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQEAAEAARPYSQRMGAVLANIAQNVSGEDAPALMVGTGKDDVHLLVVCTAKRGLCGGFNSQIARLARDHARKLLAEGKTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST 188          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_RHIE67.540e-1432.09ATP synthase gamma chain OS=Rhizobium etli (strain... [more]
ATPG_PROM17.540e-1428.88ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_MAGSA9.847e-1430.60ATP synthase gamma chain OS=Magnetospirillum magne... [more]
ATPG_CYAP49.847e-1428.88ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_PROMT1.286e-1328.88ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_BRUME1.286e-1331.72ATP synthase gamma chain OS=Brucella melitensis GN... [more]
ATPG_BRUMB1.286e-1331.72ATP synthase gamma chain OS=Brucella melitensis bi... [more]
ATPG_BRUAB1.286e-1331.72ATP synthase gamma chain OS=Brucella abortus GN=at... [more]
ATPG_BRUA21.286e-1331.72ATP synthase gamma chain OS=Brucella abortus (stra... [more]
ATPG_BRUA11.286e-1331.72ATP synthase gamma chain OS=Brucella abortus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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