CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:12..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG1_ARATH (ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 58/191 (30.37%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------TPTVD--------AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R+R+ SVKN QKIT+AMK+VAA+K+R  Q    N R   +    +L +      T  VD         KK  +V ++ D+GLCGG N+  +K +++  K   G   E   + +G+K  +  +R     ++  + E    P    +   +ADD+     + E D + ++Y+KF S+V   P + T+L
Sbjct:   52 SLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPYIPVDKYL-EAGTLP-TAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLVKSEPVIHTLL 240          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_AGRRK (ATP synthase gamma chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 61/190 (32.11%), Postives = 93/190 (48.95%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP---LNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPT 760
            S + ++NR+ SVK  QKITKAMKMVAA+KLR  Q  AE +R   Q   A+L +               T T  +  +++V  ++++GLCGG NS   + ++   +      K  K   +G+K   IL R+      LII   +      + +     L   I++     EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDLKNRIASVKATQKITKAMKMVAAAKLRRAQEAAEAARPYSQRMGAVLANITAAVSDADGAPLLMTGTGKSDVHLLVVCTAERGLCGGFNSQIARFARDHVRKLLAEGKTVKIFTVGKKGYDILRREY---ASLIIERKELRDVKRVGFENADALGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_YEAST (ATP synthase subunit gamma, mitochondrial OS=Saccharomyces cerevisiae GN=ATP3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 2
Query:  242 VRSIST-QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---GDTPTVD-------AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPT 760
            VR+ +T + V  R+KS+KNI+KITK MK+VA+++L   + KA+ S         L     +T  +D       A K +IV I+SDKGLCG I+S   K  +    LN  P+ +   V +G+K K  L+R    +I+L I  + K+   + + +++AD    ++K   +  + I Y+   S +SF P+
Sbjct:   30 VRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAE-KAKISAKKMDEAEQLFYKNAETKNLDVEATETGAPKELIVAITSDKGLCGSIHSQLAKAVR--RHLNDQPNAD--IVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFYNDPVSSLSFEPS 211          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS9 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9902) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 59/191 (30.89%), Postives = 101/191 (52.88%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTVD---AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKD--IELIITELQKNPLNYTQVSVLADDILKNVEF-----DALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSVKN +KIT+AM++VAA+K+R  Q +   SR      + +L            D P ++    +   +V I+ D+GLCGG N+  +K ++       G     K V++G KA +     S +D  I+  IT L++ P    + + +A D+L   EF     D + ++++KF ++VS  P + T+L
Sbjct:    7 IRDRIKSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLSRILENLQSRMRFEEADAPLMEQRTVETITLVAITGDRGLCGGYNANIIKRTEQRFAELKGKGFNVKLVVIGSKAISYF---SNRDYPIQAKITGLEQVP-TADEANTIATDML--AEFMAAGTDRVEMVFTKFINLVSCKPVLQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_POLNS (ATP synthase gamma chain OS=Polynucleobacter necessarius (strain STIR1) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 54/193 (27.98%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD----DILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            ST+ +R+++KSV+N +KITKAM+MVAASK+R  Q +  N+R   +    ++ +              T + KK   + +++DKGLCGG+N+  +++  +  +     + E  Y  +G K    L R   K   LI   +Q   + +  V + A     +  +  E DA+ + Y++F + +   P +  +L  E
Sbjct:    3 STKEIRSKIKSVQNTRKITKAMEMVAASKMRRAQERMRNARPYAEKIREIVANLSKANPGFRPAYMATREVKKVGTILVTTDKGLCGGLNTNVLRLIANQVRDLQEKNIEIAYTAIGSKGLQFLNRSKAK---LISQTIQIGDIPHMDVLIGAIVSQLEAFERGEIDAVYLAYTRFVNAMKQEPVLEKLLPLE 192          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BREBN (ATP synthase gamma chain OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 57/190 (30.00%), Postives = 101/190 (53.16%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA------------KKNVIVTISSDKGLCGGINSTAV-KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELI--ITELQKNP--LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            +R  +KS K++++ITKAMKMVAA+KLR  Q KAE +R        ++    +  +            KK   + I+SD+GL GG N+  + K+  ++++ +   D+   +VI G K +      SK++  L+  +T L  +P   +  +++  A  + +N + D L + Y+KF S +S +PT+  +L  E
Sbjct:    8 IRRSIKSKKDMRQITKAMKMVAAAKLRRNQDKAEAARPYADKIQEVIASIASGTSGSKHPMLQNRPVKKTGYIVITSDRGLAGGYNANILRKVVNTINEKHKSKDEYGIFVI-GRKGRDFF---SKRNYPLLDEVTGLPTSPAFADIKKIAGAAVQMFENEQIDELYLCYNKFQSAISQIPTVKQLLPLE 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRASO (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain ORS278) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 59/198 (29.80%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKIS--KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R R+ S K  QKITKAM+MVAASKLR  Q+ AE +R   +   A++ +     A               + ++++  + ++GL G  NS+ V+++  ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQLAAEAARPYAEKMDAVISNIAAASAGSPASSKLLAGTGRDQVHLLLVCTGERGLSGAFNSSIVRLARERALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRASB (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 59/198 (29.80%), Postives = 99/198 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKIS--KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R R+ S K  QKITKAM+MVAASKLR  Q+ AE +R   +   A++ +     A               + ++++  + ++GL G  NS+ V+++  ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQLAAEAARPYAEKMDAVISNIAAASAGSPASSKLLAGTGRDQVHLLLVCTGERGLSGAFNSSIVRLARERALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPB (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisB18) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKIS--KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R R+ S K  QKITKAM+MVAASKLR  Q+ AE +R   +   A++ +  +  A               + ++++  + ++GL G  NS+ V+++  ++L  +N G  KE K   +G K    L R   + I   I       L +     +A  ++    N EFD   + YS+F SV+S +PT   ++
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQLAAEAARPYAERMDAVISNIASAAAGSPGAPVLLAGTGKDQVHLLLVCTGERGLSGAFNSSIVRLARERALSLMNQG--KEVKLFCVGRKGYEQLRRTFDRQIVENIELRSVRQLGFVNAEDIAHKVVARFNNGEFDVCTLFYSRFKSVISQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCR (ATP synthase gamma chain OS=Ehrlichia chaffeensis (strain Arkansas) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 52/167 (31.14%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  275 RMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVD-------AKKN--VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD-SKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVV 745
            R+KSVK+IQK TK M+M++A+KL  +Q K EN++      ++++   P+         AKK   ++V +SSD+GLCG  N+  VK +KS  +     +KE K +  G+KA  ++    S K + +           Y ++ V    I  + +FD + I+++KF++ +
Sbjct:   10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENAKKHLLELSSIVDYVPSDGVHNCASIAKKERVLLVVMSSDRGLCGNFNNLIVKFTKSYVEKLESSNKEVKLIFFGKKAYDMMYSQYSDKILNVFSNTKSITDFLYFKLFVYNSGIDFD-QFDNVMILFNKFYTTI 175          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG1_ARATH1.286e-1330.37ATP synthase gamma chain 1, chloroplastic OS=Arabi... [more]
ATPG_AGRRK1.680e-1332.11ATP synthase gamma chain OS=Agrobacterium radiobac... [more]
ATPG_YEAST2.194e-1333.16ATP synthase subunit gamma, mitochondrial OS=Sacch... [more]
ATPG_SYNS92.194e-1330.89ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_POLNS2.194e-1327.98ATP synthase gamma chain OS=Polynucleobacter neces... [more]
ATPG_BREBN2.194e-1330.00ATP synthase gamma chain OS=Brevibacillus brevis (... [more]
ATPG_BRASO2.865e-1329.80ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_BRASB2.865e-1329.80ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_RHOPB3.742e-1329.90ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_EHRCR3.742e-1331.14ATP synthase gamma chain OS=Ehrlichia chaffeensis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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