CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:12..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ANASP (ATP synthase gamma chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 53/187 (28.34%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN +KIT+AM++VAA+++R  Q +   +R        +L            D P +   + K   ++ IS D+GLCGG N+  ++ +++  K       +  +VI+G KA+    R  ++ I+   T L++ P    + + +AD++L    + + D + ++Y++F S+VS  P + T+L
Sbjct:    7 IRDRIQSVKNTKKITEAMRLVAAARVRRAQEQVIATRPFADRLAQVLYGLQTRLRFEDVDLPLLKKREVKSVGLLVISGDRGLCGGYNTNVIRRAENRAKELKAEGLDYTFVIVGRKAEQYF-RRREQPIDASYTGLEQIP-TADEANKIADELLSLFLSEKVDRIELVYTRFVSLVSSRPVIQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_MYCCT (ATP synthase gamma chain OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD--DILKNVEFDALRIIYSKFHSVVSFLPTMATV 772
            ++  + SV+NI KIT AM++VA++KLR I  K  ++        +L  D                 A K + V I+S+ GLCGG NS   K+     KL      E++   +G KA +   R  K  I+  IT++  N  N    S+  D  D+  N EFD ++I+Y+KF + V+F P +  +
Sbjct:    7 LKTEISSVRNISKITNAMQLVASAKLRKISKKVIDTHNYVSEVYSLFNDIIRQTDKSVFLKESNFKANKTLWVVINSNLGLCGGYNSNVNKLVLQNLKL------EDEIFAIGSKAVSFF-RSKKIKIKNQITDIDINFTNKKARSISNDLLDMYINHEFDEIKIVYTKFINNVTFEPAIIRI 182          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_MARMM (ATP synthase gamma chain OS=Maricaulis maris (strain MCS10) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 61/190 (32.11%), Postives = 98/190 (51.58%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-------TP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITEL----QKNPLNYTQVSVLADDI---LKNVEFDALRIIYSKFHSVVSFLP 757
            S + ++NR+ SVK+ QKITKAM+MVAA+KLR  Q  AE +R   Q   A++ +       TP        T  +   ++V +++D+GLCGG N+  VK ++          K+ K + +G+K    L R+      LI+ ++    +K     T V +  D I    +N EFD   ++ ++F SV+S  P
Sbjct:    3 SLKDLKNRIGSVKSTQKITKAMQMVAAAKLRRAQEAAEAARPYAQRMAAVMANLSTAMSGTPGASPLLVGTGKSDAYLLVVMTADRGLCGGFNTNIVKKARERINALKAEGKDVKVICVGKKGADQLKRNF---ASLIVDKMELSGEKTITGATSVRI-GDKIRHMFENGEFDVCELVSAEFVSVISQKP 188          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_KLULA (ATP synthase subunit gamma, mitochondrial OS=Kluyveromyces lactis GN=ATP3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLW----QPFTALLGDTPTVDA-KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN--VEFDALRIIYSKFHSVVSFLPT 760
            +  R+KS+KNI+KITK MK+VA+++L   + +A+NS   +      F       P  DA KK++I+ I+SDKGLCG I+S   K  +   K     D     V +G+K K  L+R +  +++     + K    + + S++A+ IL+     +  + I ++   S +SF P+
Sbjct:   23 IETRLKSIKNIEKITKTMKIVASTRLSKAE-RAKNSAKEYALADAAFYKNAETVPLEDAEKKDLIIAITSDKGLCGSIHSQLAKAVRLQLKQTPNAD----VVAIGDKVKGQLLRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPS 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSF (ATP synthase gamma chain OS=Geobacter sp. (strain FRC-32) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 57/186 (30.65%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAK-----------KNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSK--KDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVS 748
            S + ++ R+ SVKN  +ITKAMKMV+A+KLR  Q     +R    P+ A LG+     +   DA            K +++ ++SD+GLCGG N+   K ++   K       +   + +G K    L    K  K+   + +      LNY   ++LA ++++   + EFD + IIY+ F SV+S
Sbjct:    3 SLKSIKKRIVSVKNTGQITKAMKMVSAAKLRRAQENVVAAR----PYAAKLGEVLGRLSRNQDADSSPLMIKRTTGKALLIVVTSDRGLCGGFNANLCKAAERFVKERGAEFTDLSIMTIGRKGYEFLKNRQKIRKNFGTVFSN-----LNYQTAALLAQEVIQGYLDEEFDEVFIIYNAFRSVMS 179          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_ANAVT (ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 53/187 (28.34%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN +KIT+AM++VAA+++R  Q +   +R        +L            D P +   + K   ++ IS D+GLCGG N+  ++ +++  K       +  +VI+G KA+    R  ++ I+   T L++ P    + + +AD++L    + + D + ++Y++F S+VS  P + T+L
Sbjct:    7 IRDRIQSVKNTKKITEAMRLVAAARVRRAQEQVIATRPFADRLAQVLYGLQTRLRFEDVDLPLLKKREVKSVGLLVISGDRGLCGGYNTNVIRRAENRAKELKKEGLDYTFVIVGRKAEQYF-RRREQPIDASYTGLEQIP-TAEEANKIADELLSLFLSEKVDRIELVYTRFVSLVSSRPVIQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 52/187 (27.81%), Postives = 101/187 (54.01%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R++SVKN +KIT+AM++VAA+K+R  Q +  ++R        +L            D P +   + K   ++ I+ D+GLCGG N+  ++ ++   K  +      K+V++G KA     ++ +  +      L++ P +  + S +AD++L    + E D + +IY++F S++S  P + T+L
Sbjct:    7 IRDRIQSVKNTKKITEAMRLVAAAKVRRAQEQVTSTRPFANTLLQVLYSLKSRLRLEEADLPLLKQREVKCVGLLVITGDRGLCGGYNANIIRKAERRAKELAAAGINYKFVLVGRKAVQYF-QNRQAPVAKTYAGLEQIP-SAAEASDIADELLSLFLSEEVDKIELIYTRFVSLISSQPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROMA (ATP synthase gamma chain OS=Prochlorococcus marinus GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 55/187 (29.41%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTVDAK---KNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P + A+   K  ++ ++ D+GLCGG N+  +K ++  +   S    E   V++G KA      R S+  I     +L++ P +       ++ + +  +   D + IIY+KF S+VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARVLENIQSRMKFEAADSPLLKARAVQKVTLLAVTGDRGLCGGYNTNVIKRTEQRYGELSSQGFEIDLVLIGRKAITYFQNRSSQYKIRASFQDLEQVPTSKDAEEATSEVLSEFLSESTDRVEIIYTKFISLVSCDPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP7 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 52/189 (27.51%), Postives = 97/189 (51.32%), Query Frame = 2
Query:  260 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPT--------------VDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILK---NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            + +R+R++SVKN +KIT+AM++VAA+K+R  Q +   +R        +L +                  + K   ++ ++ D+GLCGG N+  +K ++   K         K V++G KA     R     I+   TEL + P + ++ S ++D++L    +   D + +IY++F S++S  P + T+L
Sbjct:    5 KFIRDRIQSVKNTKKITEAMRLVAAAKVRRAQEQVIATRPFADALAQVLYNLQNRLQFGEVSLPLLTQREIKTVAVLVVTGDRGLCGGYNANVIKRTEQRIKELKSQGINYKLVLIGRKAVQYFER-RNAPIQTKYTELSQIP-SASEASTISDELLSLFLSETVDRVELIYTRFLSLISSKPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SPHWW (ATP synthase gamma chain OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + ++ R+ SVK+ QKITKAMKMVAA+KLR  Q+ AE  R   +   A++                   T + + +++V  +S++GL G  N+  V+ ++          K  K+ ++G+K +A+L R     I   + +     + ++   ++A+D++      EFD   + ++KF S +   PT   ++
Sbjct:    3 SLKALKVRITSVKSTQKITKAMKMVAAAKLRRAQMAAEAGRPYAERLDAVMSSLASKVTVGPQSPKLLAGTGNDQVHLLVVATSERGLAGAFNTNIVRAARKTADSLIAQGKTVKFYLIGKKGRAVLQRLFPGKIVHQVDQSHIKNVAFSDAHMVAEDLIGRYSAGEFDVAHLFFAKFQSALVQEPTELQII 194          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_ANASP3.742e-1328.34ATP synthase gamma chain OS=Anabaena sp. (strain P... [more]
ATPG_MYCCT4.887e-1331.69ATP synthase gamma chain OS=Mycoplasma capricolum ... [more]
ATPG_MARMM4.887e-1332.11ATP synthase gamma chain OS=Maricaulis maris (stra... [more]
ATPG_KLULA6.383e-1331.40ATP synthase subunit gamma, mitochondrial OS=Kluyv... [more]
ATPG_GEOSF6.383e-1330.65ATP synthase gamma chain OS=Geobacter sp. (strain ... [more]
ATPG_ANAVT6.383e-1328.34ATP synthase gamma chain OS=Anabaena variabilis (s... [more]
ATPG_SYNP28.336e-1327.81ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROMA8.336e-1329.41ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_CYAP78.336e-1327.51ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_SPHWW1.089e-1226.56ATP synthase gamma chain OS=Sphingomonas wittichii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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