CK937611

Overview
NameCK937611
Unique NameCK937611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_POLSQ (ATP synthase gamma chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 51/190 (26.84%), Postives = 94/190 (49.47%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV------------DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD-DILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            ST+ +R+++KSV+N +KITKAM+MVAASK+R  Q +  N+R   +    ++ +                + KK   + +++DKGLCGG+N+  ++   +  +     + E  Y  +G K    L R   K I   I       ++    +++A  +  +  E DA+ + Y++F + +   P +  +L  E
Sbjct:    3 STKEIRSKIKSVQNTRKITKAMEMVAASKMRRAQERMRNARPYAEKIREIVANLSKANPEFRPAYMEAREVKKVGTILVTTDKGLCGGLNTNVLRFITNQVRDLQEKNIEIVYTAIGSKGLQFLNRSKAKLISQTIQIGDTPHMDVLIGAIIAQLEAFERGEIDAVYLAYNRFVNAMKQEPVLEKLLPLE 192          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_BRAJA (ATP synthase gamma chain OS=Bradyrhizobium japonicum GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVL 775
            S + +R R+ S K  QKITKAM+MVAASKLR  Q  AE +R      +A++ +     A               + ++++  + ++GL G  NS+ V++++          KE K+  +G K    L R   K I   +       L +    V A+DI K V       EFD   + YS+F SV++ +PT   ++
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQTAAEAARPYADKMSAVISNIAGAAAGSPGAPALLAGTGRDQVHLLLVCTGERGLSGAFNSSIVRLARERALALMAQGKEVKFFCVGRKGYEQLRRQFDKQIVEHLDLRSVRQLGF----VNAEDIAKKVLARFEAGEFDVCTLFYSRFRSVIAQIPTAQQII 194          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPX (ATP synthase gamma chain OS=Synechococcus sp. (strain WH8102) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 56/190 (29.47%), Postives = 99/190 (52.11%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKD--IELIITELQKNP----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+KSVKN +KIT+AM++VAA+K+R  Q +   SR        +L             +P +   D +   +V+++ D+GLCGG N+  +K ++      +G   + K V++G KA       +K+D  ++   + L++ P     N     VLA+ I      D + +I++KF ++VS  P + T+L
Sbjct:    7 IRDRIKSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARILENLQSRMRFEDASSPLMEQRDVETITLVSVTGDRGLCGGYNANIIKRTEQRFAELTGKGFKVKLVLIGNKAIGYF---TKRDYPVQATFSGLEQVPTADEANTISTDVLAEFI--GAGTDRVELIFTKFINLVSCKPVVQTLL 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RICPR (ATP synthase gamma chain OS=Rickettsia prowazekii GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 54/191 (28.27%), Postives = 95/191 (49.74%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT----------------PTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIE--LIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            +R R+KSVK+ QKITKAM++V+ASK+  I+ +  NS    +    ++ D                  T+ +K N+++ ++S++GLCG  N + +K  K+  K  +   ++ K +I+G+K    L R     I      T++    L   QV       +KN+E     I ++KF + ++ +PT   +L  E
Sbjct:    7 LRTRIKSVKSTQKITKAMQLVSASKMTKIKTQIANSNFYIEAINKMMSDICSMTSCELSIEEQKFFNTMPSKINLLIVMTSERGLCGMFNYSIIKQVKNDIKELTNKGEQIKLIIIGKKGYEALKRQYANYINSYFEFTKIHSENL-ILQVKEKIMCAVKNLEVSNCIIYFNKFKNAMTQIPTKQKILPIE 196          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPS (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisB5) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 55/187 (29.41%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPT 760
            S + +R R+ S K  QKITKAM+MVAASKLR  Q+ AE +R   +   A++ +     A               + ++++  + ++GL G  NS+ V++++          K  K+  +G K    L R   K I   I       L +     +A  ++    N EFD   + YS+F SV+S +PT
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQMAAEAARPYAEKMDAVISNIAGAAAGSPGAPVLLAGTGKDQVHLLLVCTGERGLSGAFNSSIVRLARERAYALMNQGKTVKFFCVGRKGYEQLRRTFDKQIIENIELRSVRQLGFVNAEDIAQKVIARFNNGEFDVCTLFYSRFKSVISQIPT 189          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROM4 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9211) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 53/187 (28.34%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-----------GDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D P +   D +   ++ ++ D+GLCGG N+  +K ++  +            V++G KA      R S+  I     +L++ P +    SV ++ + +  +   D + +IY+KF S+VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQEQVLRSRPFADRLARVLQNIQSRMQFETADAPLLKSRDVRTITLLAVTGDRGLCGGYNTNIIKRTEQRYNELKRQGFTPDLVLIGRKAIGYFQNRSSQYKIRAFFQDLEQVPTSKDAESVTSEILAEFLSKSTDRIEVIYTKFISLVSCNPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_NITHX (ATP synthase gamma chain OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 55/197 (27.92%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA---------------KKNVIVTISSDKGLCGGINSTAVKIS--KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + +R R+ S K  QKITKAM+MVAASKLR  Q  AE +R   +    ++ +  +  A               + ++++  + ++GL G  NS+ V+++  ++L  +N G  K+ K+  +G K    L R  +K I   +       L +     +A  ++      EFD   + YS+F SV++ +PT   ++  E
Sbjct:    3 SLKDMRVRIASTKATQKITKAMQMVAASKLRRAQSAAEAARPYAEKMDQVISNIASAAAGSPGAPVLLGGTGKDQVHLLLVCTGERGLSGAFNSSIVRLARERALALMNQG--KDVKFFCVGRKGYEQLRRTFEKQIVENVELRSVRQLGFVNAEAIAKKVIARFNAGEFDVCTLFYSRFKSVIAQVPTAQQIIPLE 197          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_GEOLS (ATP synthase gamma chain OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 55/196 (28.06%), Postives = 96/196 (48.98%), Query Frame = 2
Query:  254 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT-------------PTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLXXE 784
            S + ++ R+ SVKN ++ITKAMKMV+A+KLR  Q     +R    P+   +G+              P +   DAKK +++ ++SD+GLCGG N+   K  +   K       +   + +G K    L   S+  +      +   P NY   ++LA D+++     E+D + ++++ F +V+S   T   +L  E
Sbjct:    3 SLKSIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAAR----PYAQKMGEVLQSLAGNLEGNLHPLLEKRDAKKLLLIVVTSDRGLCGGFNTNLCKAGERYIKEKQAEFDQISIMTVGRKGYEFL--KSRHTVYKNFANMLSKP-NYQAAAMLAQDVIEGYLAEEYDQVVMLFNSFRTVMSQDITFQQLLPIE 191          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_PROMP (ATP synthase gamma chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 56/192 (29.17%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  266 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL 775
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + KK  +V I++D+GLCGG N+  +K  +  +        E   +++G+KA           +++ + K++E + T +    +      VLA+ + +N   D + IIY+KF ++VS  P + T+L
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKRNVKKISLVCITADRGLCGGYNTNIIKKVEIRYAELIKQGYEPNLILVGKKAIGYFQNRKDRYVIKSTFKELEQVPTAIDSEGITN---DVLAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLL 193          
BLAST of CK937611 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCJ (ATP synthase gamma chain OS=Ehrlichia canis (strain Jake) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  275 RMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG--DTPTVD-------AKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE-FDALRIIYSKFHSVVSFLPT 760
            R+KSVK+IQK TK M+M++A+KL  +Q K EN+R      + ++   D   V         +K ++V +SSD+GLCG  N+  VK +KS  +     +KE   +  G+KA  ++       I  ++ ++ K+  N+    +       N E FD + ++++KF+S +   P+
Sbjct:   10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENARKHLLEISNVIDSVDKDNVSDVFSKHKKEKVLLVIMSSDRGLCGNFNNLIVKFTKSYIEDLESDNKEVNLLFFGKKAYDMMYSQYSDKILNVLPDV-KSITNFLYFKLFVYSSGVNFEKFDNVIVLFNKFYSTILQKPS 180          
The following BLAST results are available for this feature:
BLAST of CK937611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ATPG_POLSQ1.089e-1226.84ATP synthase gamma chain OS=Polynucleobacter sp. (... [more]
ATPG_BRAJA1.089e-1229.59ATP synthase gamma chain OS=Bradyrhizobium japonic... [more]
ATPG_SYNPX1.422e-1229.47ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_RICPR1.422e-1228.27ATP synthase gamma chain OS=Rickettsia prowazekii ... [more]
ATPG_RHOPS1.422e-1229.41ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_PROM41.422e-1228.34ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_NITHX1.422e-1227.92ATP synthase gamma chain OS=Nitrobacter hamburgens... [more]
ATPG_GEOLS1.422e-1228.06ATP synthase gamma chain OS=Geobacter lovleyi (str... [more]
ATPG_PROMP1.857e-1229.17ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_EHRCJ1.857e-1230.23ATP synthase gamma chain OS=Ehrlichia canis (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937611 ID=CK937611; Name=CK937611; organism=Citrus sinensis; type=EST; length=786bp
GGGGGAGGTGAAATTTGTTCGACACCTGAGCTCGCACGACCCAAACAGAA
CATAAAGCTTTGGATCTGCAGTGTTCAAAATAAAATATTTCTAGGGTTTC
CTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGA
AGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCCAATCGCCGCAA
TCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCT
ATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTTAAGAATATTCA
GAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAA
TTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCA
CTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGAC
CATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTA
AGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAAC
AAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTC
AAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCA
ATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAA
TTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTCTCCTT
TCTGCCGACAATGGCAACTGTATTATNNNNTGAGCT
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