CK937607

Overview
NameCK937607
Unique NameCK937607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_HUMAN (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+ ++  F +L RLT +   IV AL +S   L+ +S +  K++R    P+ EV      D K  +V ++  P D ++++++    + G++ +I +R
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 143          
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_BOVIN (Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+ ++  F +L RLT +   IV AL +S   L+ +S +  K++R    P+ EV      D K  +V ++  P D ++++++    + G++ +I +R
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWLEDKGQVLNIQMR 143          
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_MOUSE (Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+  +  F +L RLT +   IV AL +S   L+ VS++  K++R    P+ EV      D K  +V ++  P D ++++++    + G+I +I +R
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143          
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LAH1_SCHPO (La protein homolog OS=Schizosaccharomyces pombe GN=sla1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/155 (33.55%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  304 EDPIKDHENSSTPAVLTDDLKQ-------RIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES-SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENL--PEDHSVENMQRIFAE-AGKIKSICIR 735
            +D   + +   T     DD K+        ++KQVE+YFSD NLP DK++    +KN +G+VPI  IA+F++++R     A IV ALR+S  LL V   G+KV+R+ PL   + +     +V  +     +D +   +++ F E AG I ++ +R
Sbjct:   37 KDTTSEEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEA-IVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPISAVRMR 189          
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_DROME (La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  364 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALR--ESSLLVVSSNGKKVKRLNPLPVTEVRDPKL-----FTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735
            ++ II+QVEYYF D NL  DK++   I KN++G+VP+SV+ +F++L  L+ + + IVAAL   E  L+ +S +   ++R    P+ E  + +       T   +  P D  +  +    A   K+ ++ +R
Sbjct:   51 ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMR 181          
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LARP4_MOUSE (La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  319 DHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIF 699
            D    S+ A+ T+DLK+ + KQ+E+ FS ENL  D Y+++  + + + FVPI  +A+  ++K+LT N   I+  LR S ++ V   G+KV+  +          K   V++  +PE   VE ++ +F
Sbjct:  101 DVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETTPVEEVKALF 215          
The following BLAST results are available for this feature:
BLAST of CK937607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LA_HUMAN1.883e-1233.33Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2[more]
LA_BOVIN1.883e-1233.33Lupus La protein homolog OS=Bos taurus GN=SSB PE=2... [more]
LA_MOUSE2.459e-1234.85Lupus La protein homolog OS=Mus musculus GN=Ssb PE... [more]
LAH1_SCHPO1.594e-1133.55La protein homolog OS=Schizosaccharomyces pombe GN... [more]
LA_DROME2.081e-1131.30La protein homolog OS=Drosophila melanogaster GN=L... [more]
LARP4_MOUSE3.550e-1132.28La-related protein 4 OS=Mus musculus GN=Larp4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937607 ID=CK937607; Name=CK937607; organism=Citrus sinensis; type=EST; length=790bp
GCGGGGAGAGAGANNNCAGGAGAAGAAAGAAGAATNNNCGGGAGGGGTTT
TACCTAAAGGGAATCTCATTTCAGCCTATTCTTGCCTCAATACTCTTTTC
TTCGTCCTCTACCCCTCTCCTTCCGTCCCCAGAAAATGGACGGCTTAGAG
GGTCCCACCTCTACCACCGCCATCCCGGCCGTGGATTCGAACCCACCGTC
TCCTCGGCTCGATCCAGATTTCTCTCCCGTTGGATCACCCGAGCACGACA
TCCCTGATGTTCCAGTTCCACCGTCAGATGACGATCATGATCACGACCAC
TGCGAGGATCCGATTAAAGATCACGAGAACTCCTCTACTCCGGCTGTTCT
CACTGATGATCTGAAACAAAGGATCATTAAGCAGGTGGAATACTATTTTA
GTGATGAGAATTTGCCAACTGATAAGTATATGATGAATTTGATTAGAAAG
AATAAAGAAGGTTTCGTTCCAATATCAGTTATTGCTTCTTTTAGGAAATT
GAAGAGGCTTACCCGAAACCATGCATGGATAGTGGCTGCACTCAGGGAAT
CATCCTTGCTTGTTGTGAGTTCAAATGGGAAGAAGGTAAAGCGCCTTAAT
CCTCTGCCAGTCACTGAAGTCAGGGATCCTAAGTTATTCACTGTTTTGGT
AGAGAATCTACCTGAGGATCACTCGGTAGAGAACATGCAGAGAATATTTG
CAGAAGCTGGAAAAATAAAAAGCATCTGCATCCGTGATCCAAAATGTTGT
GGAAGAGTCAAAAAAAAGCAGCAAATATGAGTACTTGGTT
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