CK937607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_HUMAN (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12 Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ ++ F +L RLT + IV AL +S L+ +S + K++R P+ EV D K +V ++ P D ++++++ + G++ +I +R Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 143
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_BOVIN (Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12 Identity = 44/132 (33.33%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ ++ F +L RLT + IV AL +S L+ +S + K++R P+ EV D K +V ++ P D ++++++ + G++ +I +R Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWLEDKGQVLNIQMR 143
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_MOUSE (Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ + F +L RLT + IV AL +S L+ VS++ K++R P+ EV D K +V ++ P D ++++++ + G+I +I +R Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LAH1_SCHPO (La protein homolog OS=Schizosaccharomyces pombe GN=sla1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11 Identity = 52/155 (33.55%), Postives = 85/155 (54.84%), Query Frame = 1 Query: 304 EDPIKDHENSSTPAVLTDDLKQ-------RIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES-SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENL--PEDHSVENMQRIFAE-AGKIKSICIR 735 +D + + T DD K+ ++KQVE+YFSD NLP DK++ +KN +G+VPI IA+F++++R A IV ALR+S LL V G+KV+R+ PL + + +V + +D + +++ F E AG I ++ +R Sbjct: 37 KDTTSEEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEA-IVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPISAVRMR 189
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LA_DROME (La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11 Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 364 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALR--ESSLLVVSSNGKKVKRLNPLPVTEVRDPKL-----FTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 ++ II+QVEYYF D NL DK++ I KN++G+VP+SV+ +F++L L+ + + IVAAL E L+ +S + ++R P+ E + + T + P D + + A K+ ++ +R Sbjct: 51 ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMR 181
BLAST of CK937607 vs. ExPASy Swiss-Prot
Match: LARP4_MOUSE (La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11 Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 319 DHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIF 699 D S+ A+ T+DLK+ + KQ+E+ FS ENL D Y+++ + + + FVPI +A+ ++K+LT N I+ LR S ++ V G+KV+ + K V++ +PE VE ++ +F Sbjct: 101 DVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETTPVEEVKALF 215 The following BLAST results are available for this feature:
BLAST of CK937607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937607 ID=CK937607; Name=CK937607; organism=Citrus sinensis; type=EST; length=790bpback to top |