FC921779

Overview
NameFC921779
Unique NameFC921779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_STRLI (Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.000e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:   63 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 218
            +E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:   93 VELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 144
[Close]
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.000e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:   63 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 218
            +E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:  397 VELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 448
[Close]
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.540e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = -3 
Query:   54 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 218
            LE+TG  VTEC+GG   +  DDLS+ Y + CDPRLN  Q+LELAF++A+  R+ R
Sbjct:  414 LELTGDAVTECLGGGAGLDEDDLSTNYTSFCDPRLNEKQALELAFLVADHYRQER 468
The following BLAST results are available for this feature:
BLAST of FC921779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_STRLI3.000e-1259.62Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragm... [more]
AROF_STRCO3.000e-1259.62Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR2.540e-1154.55Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

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Properties
Property NameValue
Genbank descriptionC06052C03T7 RindPdigS Citrus sinensis cDNA clone C06052C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921779 ID=FC921779; Name=FC921779; organism=Citrus sinensis; type=EST; length=220bp
CTCCGGCCATTCTACAGGAGAGAAGAAGAGGCAAGAGGTTGCTGTGAGCT
AATCCTCCTCTTTCTGAGCCGCTCGGCAATGATGAAGGCAAGCTCAAGTG
ACTGTGAAGCATTGAGCCTAGGGTCACAGTGGGTGTGGTAGCGTGAACTC
AAGTCGTCGAATGTCACTGTTCTTGACCCACCGATGCACTCTGTCACATT
CTGGCCTGTCATCTCCAAAT
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