CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_JASNU (DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.905e-39
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GGLFCERIFGP KSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   53 GGLFCERIFGPQKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OLIPU (DNA-directed RNA polymerase subunit beta' OS=Olimarabidopsis pumila GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOBMA (DNA-directed RNA polymerase subunit beta' OS=Lobularia maritima GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LEPVR (DNA-directed RNA polymerase subunit beta' OS=Lepidium virginicum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_EUCGG (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIAN+LDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANILDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DRANE (DNA-directed RNA polymerase subunit beta' OS=Draba nemorosa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CAPBU (DNA-directed RNA polymerase subunit beta' OS=Capsella bursa-pastoris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKR+PSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRIPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ARATH (DNA-directed RNA polymerase subunit beta' OS=Arabidopsis thaliana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.367e-39
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_JASNU4.905e-3986.90DNA-directed RNA polymerase subunit beta' OS=Jasmi... [more]
RPOC1_OLIPU6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Olima... [more]
RPOC1_LOBMA6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Lobul... [more]
RPOC1_LEPVR6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Lepid... [more]
RPOC1_EUCGG6.406e-3986.75DNA-directed RNA polymerase subunit beta' OS=Eucal... [more]
RPOC1_DRANE6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Draba... [more]
RPOC1_CAPBU6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Capse... [more]
RPOC1_BUXMI6.406e-3986.75DNA-directed RNA polymerase subunit beta' OS=Buxus... [more]
RPOC1_ARATH6.406e-3987.95DNA-directed RNA polymerase subunit beta' OS=Arabi... [more]
RPOC1_VITVI8.367e-3986.75DNA-directed RNA polymerase subunit beta' OS=Vitis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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