CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_JASNU (DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 4.905e-39 Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 1 Query: 1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GGLFCERIFGP KSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 53 GGLFCERIFGPQKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OLIPU (DNA-directed RNA polymerase subunit beta' OS=Olimarabidopsis pumila GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOBMA (DNA-directed RNA polymerase subunit beta' OS=Lobularia maritima GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LEPVR (DNA-directed RNA polymerase subunit beta' OS=Lepidium virginicum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_EUCGG (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIAN+LDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANILDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DRANE (DNA-directed RNA polymerase subunit beta' OS=Draba nemorosa GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CAPBU (DNA-directed RNA polymerase subunit beta' OS=Capsella bursa-pastoris GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKR+PSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRIPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ARATH (DNA-directed RNA polymerase subunit beta' OS=Arabidopsis thaliana GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 8.367e-39 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |