CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PLAOC (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 8.367e-39 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPL+E Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLRE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIAN LDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NANDO (DNA-directed RNA polymerase subunit beta' OS=Nandina domestica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGD+KEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDKKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_RANMC (DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PANGI (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng GN=rpoC1 PE=3 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NASOF (DNA-directed RNA polymerase subunit beta' OS=Nasturtium officinale GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_IPOPU (DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEF+DS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BARVE (DNA-directed RNA polymerase subunit beta' OS=Barbarea verna GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38 Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_POPTR (DNA-directed RNA polymerase subunit beta' OS=Populus trichocarpa GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLK+ Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKQ 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_POPAL (DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKQ 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |