CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PLAOC (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.367e-39
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPL+E
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLRE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIAN LDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NANDO (DNA-directed RNA polymerase subunit beta' OS=Nandina domestica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGD+KEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDKKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_RANMC (DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PANGI (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NASOF (DNA-directed RNA polymerase subunit beta' OS=Nasturtium officinale GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_IPOPU (DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEF+DS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BARVE (DNA-directed RNA polymerase subunit beta' OS=Barbarea verna GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEK+DP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_POPTR (DNA-directed RNA polymerase subunit beta' OS=Populus trichocarpa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLK+
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKQ 143
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_POPAL (DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKQ 136
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_PLAOC8.367e-3986.75DNA-directed RNA polymerase subunit beta' OS=Plata... [more]
RPOC1_SPIOL1.093e-3886.75DNA-directed RNA polymerase subunit beta' OS=Spina... [more]
RPOC1_NANDO1.093e-3886.75DNA-directed RNA polymerase subunit beta' OS=Nandi... [more]
RPOC1_RANMC1.427e-3886.75DNA-directed RNA polymerase subunit beta' OS=Ranun... [more]
RPOC1_PANGI1.427e-3886.75DNA-directed RNA polymerase subunit beta' OS=Panax... [more]
RPOC1_NASOF1.427e-3886.75DNA-directed RNA polymerase subunit beta' OS=Nastu... [more]
RPOC1_IPOPU1.427e-3885.54DNA-directed RNA polymerase subunit beta' OS=Ipomo... [more]
RPOC1_BARVE1.427e-3886.75DNA-directed RNA polymerase subunit beta' OS=Barba... [more]
RPOC1_POPTR2.434e-3885.54DNA-directed RNA polymerase subunit beta' OS=Popul... [more]
RPOC1_POPAL2.434e-3885.54DNA-directed RNA polymerase subunit beta' OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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