CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CRUWA (DNA-directed RNA polymerase subunit beta' OS=Crucihimalaya wallichii GN=rpoC1 PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDE EDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDENEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MORIN (DNA-directed RNA polymerase subunit beta' OS=Morus indica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.179e-38 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG++KEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNDKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LEMMI (DNA-directed RNA polymerase subunit beta' OS=Lemna minor GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.179e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SINAL (DNA-directed RNA polymerase subunit beta' OS=Sinapis alba GN=rpoC1 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEK DP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKGDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AETGR (DNA-directed RNA polymerase subunit beta' OS=Aethionema grandiflora GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFV S + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVGSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AETCO (DNA-directed RNA polymerase subunit beta' OS=Aethionema cordifolium GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFV S + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVGSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOGR (DNA-directed RNA polymerase subunit beta' OS=Acorus gramineus GN=rpoC1 PE=3 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOAM (DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38 Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LIRTU (DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera GN=rpoC1 PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 5.423e-38 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIA+LLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIASLLDKPLKE 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |