CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CRUWA (DNA-directed RNA polymerase subunit beta' OS=Crucihimalaya wallichii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.434e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDE EDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDENEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MORIN (DNA-directed RNA polymerase subunit beta' OS=Morus indica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.179e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG++KEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNDKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LEMMI (DNA-directed RNA polymerase subunit beta' OS=Lemna minor GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.179e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SINAL (DNA-directed RNA polymerase subunit beta' OS=Sinapis alba GN=rpoC1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEK DP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKGDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AETGR (DNA-directed RNA polymerase subunit beta' OS=Aethionema grandiflora GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFV S + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVGSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AETCO (DNA-directed RNA polymerase subunit beta' OS=Aethionema cordifolium GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFV S + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVGSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOGR (DNA-directed RNA polymerase subunit beta' OS=Acorus gramineus GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOCL (DNA-directed RNA polymerase subunit gamma OS=Acorus calamus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ACOAM (DNA-directed RNA polymerase subunit beta' OS=Acorus americanus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.152e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKEDP+FCEQCGVEF+DS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LIRTU (DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.423e-38
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG+EKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIA+LLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIASLLDKPLKE 136
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_CRUWA2.434e-3886.75DNA-directed RNA polymerase subunit beta' OS=Cruci... [more]
RPOC1_MORIN3.179e-3885.54DNA-directed RNA polymerase subunit beta' OS=Morus... [more]
RPOC1_LEMMI3.179e-3886.75DNA-directed RNA polymerase subunit beta' OS=Lemna... [more]
RPOC1_SINAL4.152e-3886.75DNA-directed RNA polymerase subunit beta' OS=Sinap... [more]
RPOC1_AETGR4.152e-3886.75DNA-directed RNA polymerase subunit beta' OS=Aethi... [more]
RPOC1_AETCO4.152e-3886.75DNA-directed RNA polymerase subunit beta' OS=Aethi... [more]
RPOC1_ACOGR4.152e-3885.54DNA-directed RNA polymerase subunit beta' OS=Acoru... [more]
RPOC1_ACOCL4.152e-3885.54DNA-directed RNA polymerase subunit gamma OS=Acoru... [more]
RPOC1_ACOAM4.152e-3885.54DNA-directed RNA polymerase subunit beta' OS=Acoru... [more]
RPOC1_LIRTU5.423e-3885.54DNA-directed RNA polymerase subunit beta' OS=Lirio... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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