CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.083e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGV+FVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDK LKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVQFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKSLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ARAHI (DNA-directed RNA polymerase subunit beta' OS=Arabis hirsuta GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.083e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKED +FCEQCGVEF+DS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDSKFCEQCGVEFIDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DRIGR (DNA-directed RNA polymerase subunit beta' OS=Drimys granadensis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.250e-38
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW  KRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERISGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYFKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSRE (DNA-directed RNA polymerase subunit beta' OS=Cuscuta reflexa GN=rpoC1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.250e-38
Identity = 69/83 (83.13%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKE+P+FCEQCGVEFVDS + R +MG  KL CPVTHVW LKRLPSYIAN+LDKP+KE
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYRMGCIKLACPVTHVWYLKRLPSYIANILDKPIKE 143
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 9.250e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGD+KED +FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CERDE (DNA-directed RNA polymerase subunit beta' OS=Ceratophyllum demersum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.250e-38
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR+IGD+KEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERISGPIKSGICACGNYRVIGDKKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENPA (DNA-directed RNA polymerase subunit beta' OS=Oenothera parviflora GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENGL (DNA-directed RNA polymerase subunit beta' OS=Oenothera glazioviana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENEH (DNA-directed RNA polymerase subunit beta' OS=Oenothera elata subsp. hookeri GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENBI (DNA-directed RNA polymerase subunit beta' OS=Oenothera biennis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_COFAR7.083e-3885.54DNA-directed RNA polymerase subunit beta' OS=Coffe... [more]
RPOC1_ARAHI7.083e-3885.54DNA-directed RNA polymerase subunit beta' OS=Arabi... [more]
RPOC1_DRIGR9.250e-3885.54DNA-directed RNA polymerase subunit beta' OS=Drimy... [more]
RPOC1_CUSRE9.250e-3883.13DNA-directed RNA polymerase subunit beta' OS=Cuscu... [more]
RPOC1_CUCSA9.250e-3885.54DNA-directed RNA polymerase subunit beta' OS=Cucum... [more]
RPOC1_CERDE9.250e-3885.54DNA-directed RNA polymerase subunit beta' OS=Cerat... [more]
RPOC1_OENPA2.061e-3784.34DNA-directed RNA polymerase subunit beta' OS=Oenot... [more]
RPOC1_OENGL2.061e-3784.34DNA-directed RNA polymerase subunit beta' OS=Oenot... [more]
RPOC1_OENEH2.061e-3784.34DNA-directed RNA polymerase subunit beta' OS=Oenot... [more]
RPOC1_OENBI2.061e-3784.34DNA-directed RNA polymerase subunit beta' OS=Oenot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
back to top