CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_OPITP (DNA-directed RNA polymerase subunit beta' OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GGLFC++IFGP++ CACG Y+ I K C++CGVE + + R +MG +L PV H+W LK +PS + LLD Sbjct: 65 GGLFCQKIFGPVRDYECACGKYKRI---KYKDVVCDRCGVEVTIARVRRERMGHIELAVPVAHIWFLKSMPSRLGLLLD 140
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBU (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii GN=rpoC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14 Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I LLD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBR (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14 Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I LLD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBN (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14 Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I LLD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_ACICJ (DNA-directed RNA polymerase subunit beta' OS=Acidiphilium cryptum (strain JF-5) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14 Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS IA +++ LK+ Sbjct: 55 GLFCARIFGPIKDYECLCGKYKRM---KFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIATMVEMTLKD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THIDA (DNA-directed RNA polymerase subunit beta' OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THICR (DNA-directed RNA polymerase subunit beta' OS=Thiomicrospira crunogena (strain XCL-2) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPI+ C CG Y+ + K CE+CGVE S + R +MG L V H+W LK LPS I +LD LKE Sbjct: 55 GLFCAKIFGPIRDYECLCGKYKRL---KHRGVICEKCGVEVTQSKVRRERMGHIDLATSVAHIWFLKSLPSRIGLMLDMTLKE 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITMU (DNA-directed RNA polymerase subunit beta' OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MARAV (DNA-directed RNA polymerase subunit beta' OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_ELUMP (DNA-directed RNA polymerase subunit beta' OS=Elusimicrobium minutum (strain Pei191) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCERIFGP K C+CG YR + K C++CGVE ++ + R +MG +L PV HVW L++ PS I +LD Sbjct: 57 GLFCERIFGPTKDYECSCGKYRWV---KYKGMQCDRCGVEITEAKVRRERMGHLELAVPVAHVWFLRKNPSRIGIMLD 131 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |