CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_OPITP (DNA-directed RNA polymerase subunit beta' OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GGLFC++IFGP++   CACG Y+ I   K     C++CGVE   + + R +MG  +L  PV H+W LK +PS +  LLD
Sbjct:   65 GGLFCQKIFGPVRDYECACGKYKRI---KYKDVVCDRCGVEVTIARVRRERMGHIELAVPVAHIWFLKSMPSRLGLLLD 140          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBU (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  LLD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBR (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  LLD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_COXBN (DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  LLD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPSRIGLLLDVTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_ACICJ (DNA-directed RNA polymerase subunit beta' OS=Acidiphilium cryptum (strain JF-5) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.181e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS IA +++  LK+
Sbjct:   55 GLFCARIFGPIKDYECLCGKYKRM---KFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIATMVEMTLKD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THIDA (DNA-directed RNA polymerase subunit beta' OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THICR (DNA-directed RNA polymerase subunit beta' OS=Thiomicrospira crunogena (strain XCL-2) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPI+   C CG Y+ +   K     CE+CGVE   S + R +MG   L   V H+W LK LPS I  +LD  LKE
Sbjct:   55 GLFCAKIFGPIRDYECLCGKYKRL---KHRGVICEKCGVEVTQSKVRRERMGHIDLATSVAHIWFLKSLPSRIGLMLDMTLKE 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITMU (DNA-directed RNA polymerase subunit beta' OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MARAV (DNA-directed RNA polymerase subunit beta' OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_ELUMP (DNA-directed RNA polymerase subunit beta' OS=Elusimicrobium minutum (strain Pei191) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GLFCERIFGP K   C+CG YR +   K     C++CGVE  ++ + R +MG  +L  PV HVW L++ PS I  +LD
Sbjct:   57 GLFCERIFGPTKDYECSCGKYRWV---KYKGMQCDRCGVEITEAKVRRERMGHLELAVPVAHVWFLRKNPSRIGIMLD 131          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_OPITP4.181e-1445.57DNA-directed RNA polymerase subunit beta' OS=Opitu... [more]
RPOC_COXBU4.181e-1446.99DNA-directed RNA polymerase subunit beta' OS=Coxie... [more]
RPOC_COXBR4.181e-1446.99DNA-directed RNA polymerase subunit beta' OS=Coxie... [more]
RPOC_COXBN4.181e-1446.99DNA-directed RNA polymerase subunit beta' OS=Coxie... [more]
RPOC_ACICJ4.181e-1446.99DNA-directed RNA polymerase subunit beta' OS=Acidi... [more]
RPOC_THIDA5.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Thiob... [more]
RPOC_THICR5.461e-1446.99DNA-directed RNA polymerase subunit beta' OS=Thiom... [more]
RPOC_NITMU5.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Nitro... [more]
RPOC_MARAV5.461e-1445.78DNA-directed RNA polymerase subunit beta' OS=Marin... [more]
RPOC_ELUMP5.461e-1447.44DNA-directed RNA polymerase subunit beta' OS=Elusi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
back to top