CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CORU7 (DNA-directed RNA polymerase subunit beta' OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGP + C+CG Y+ + + CE+CGVE S + R +MG +L PVTH+W K +PS + LLD K+ Sbjct: 45 GLFCERIFGPTRDWECSCGKYKRV---RYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CHRSD (DNA-directed RNA polymerase subunit beta' OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I LD L++ Sbjct: 55 GLFCAKIFGPVKDYECLCGKYKRM---KHRGIICEKCGVEVTKAAVRRERMGHIELAAPVAHIWFLKSLPSRIGMFLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BORPD (DNA-directed RNA polymerase subunit beta' OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCSKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AZOSB (DNA-directed RNA polymerase subunit beta' OS=Azoarcus sp. (strain BH72) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 57 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AKKM8 (DNA-directed RNA polymerase subunit beta' OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rpoC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GGLFCERIFGP + CACG Y+ I K C++CGVE ++ + R +MG +L PV+H+W K +PS I +LD Sbjct: 57 GGLFCERIFGPTRDMECACGKYKRI---KHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFYKCMPSRIGLMLD 132
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THET8 (DNA-directed RNA polymerase subunit beta' OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpoC PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLF ERIFGPIK CACG Y+ ++ + + CE+CGVE S + R +MG +L P H+W +K +PS I LLD Sbjct: 43 GLFDERIFGPIKDYECACGKYK---RQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLD 117
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THET2 (DNA-directed RNA polymerase subunit beta' OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpoC PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLF ERIFGPIK CACG Y+ ++ + + CE+CGVE S + R +MG +L P H+W +K +PS I LLD Sbjct: 43 GLFDERIFGPIKDYECACGKYK---RQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLD 117
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_SILST (DNA-directed RNA polymerase subunit beta' OS=Silicibacter sp. (strain TM1040) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_SILPO (DNA-directed RNA polymerase subunit beta' OS=Silicibacter pomeroyi GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS5 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |