CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CORU7 (DNA-directed RNA polymerase subunit beta' OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGP +   C+CG Y+ +   +     CE+CGVE   S + R +MG  +L  PVTH+W  K +PS +  LLD   K+
Sbjct:   45 GLFCERIFGPTRDWECSCGKYKRV---RYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CHRSD (DNA-directed RNA polymerase subunit beta' OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I   LD  L++
Sbjct:   55 GLFCAKIFGPVKDYECLCGKYKRM---KHRGIICEKCGVEVTKAAVRRERMGHIELAAPVAHIWFLKSLPSRIGMFLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BORPD (DNA-directed RNA polymerase subunit beta' OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCSKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AZOSB (DNA-directed RNA polymerase subunit beta' OS=Azoarcus sp. (strain BH72) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   57 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AKKM8 (DNA-directed RNA polymerase subunit beta' OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rpoC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GGLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GGLFCERIFGP +   CACG Y+ I   K     C++CGVE  ++ + R +MG  +L  PV+H+W  K +PS I  +LD
Sbjct:   57 GGLFCERIFGPTRDMECACGKYKRI---KHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFYKCMPSRIGLMLD 132          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THET8 (DNA-directed RNA polymerase subunit beta' OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpoC PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GLF ERIFGPIK   CACG Y+    ++ + + CE+CGVE   S + R +MG  +L  P  H+W +K +PS I  LLD
Sbjct:   43 GLFDERIFGPIKDYECACGKYK---RQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLD 117          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_THET2 (DNA-directed RNA polymerase subunit beta' OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpoC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GLF ERIFGPIK   CACG Y+    ++ + + CE+CGVE   S + R +MG  +L  P  H+W +K +PS I  LLD
Sbjct:   43 GLFDERIFGPIKDYECACGKYK---RQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLD 117          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_SILST (DNA-directed RNA polymerase subunit beta' OS=Silicibacter sp. (strain TM1040) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_SILPO (DNA-directed RNA polymerase subunit beta' OS=Silicibacter pomeroyi GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS5 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_CORU75.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Coryn... [more]
RPOC_CHRSD5.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Chrom... [more]
RPOC_BORPD5.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Borde... [more]
RPOC_AZOSB5.461e-1444.58DNA-directed RNA polymerase subunit beta' OS=Azoar... [more]
RPOC_AKKM85.461e-1446.84DNA-directed RNA polymerase subunit beta' OS=Akker... [more]
RPOC_THET87.132e-1447.44DNA-directed RNA polymerase subunit beta' OS=Therm... [more]
RPOC_THET27.132e-1447.44DNA-directed RNA polymerase subunit beta' OS=Therm... [more]
RPOC_SILST7.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Silic... [more]
RPOC_SILPO7.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Silic... [more]
RPOC_RHOS57.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Rhodo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
back to top