CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS4 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS1 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpoC1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_PARDP (DNA-directed RNA polymerase subunit beta' OS=Paracoccus denitrificans (strain Pd 1222) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITEU (DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas europaea GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSLPSRLGLVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MICLC (DNA-directed RNA polymerase subunit beta' OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCE+IFGP + CACG Y+ + + CE+CGVE S + R +MG +L PVTH+W K +PS + LLD K+ Sbjct: 45 GLFCEKIFGPTRDWECACGKYKRV---RFKGIICERCGVEVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MAGSA (DNA-directed RNA polymerase subunit beta' OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I L D LK+ Sbjct: 55 GLFCARIFGPIKDYECLCGKYKRM---KYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLCDMTLKD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_JANSC (DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain CCS1) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + R +MG +L PV H+W LK LPS I +LD L++ Sbjct: 57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_HALHL (DNA-directed RNA polymerase subunit beta' OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpoC PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE + + R +MG L PV H+W LK LPS I LLD L++ Sbjct: 56 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVVCEKCGVEVTVAKVRRERMGHIDLASPVAHIWFLKSLPSRIGLLLDMTLRD 135
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_GRABC (DNA-directed RNA polymerase subunit beta' OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC RIFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS I ++D LKE Sbjct: 55 GLFCARIFGPIKDYECLCGKYKRM---KFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLMVDLTLKE 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CORJK (DNA-directed RNA polymerase subunit beta' OS=Corynebacterium jeikeium (strain K411) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14 Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGP + C CG Y+ + + CE+CGVE S + R +MG +L PVTH+W K +PS + LLD K+ Sbjct: 45 GLFCERIFGPTRDWECGCGKYKRV---RYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |