CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS4 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_RHOS1 (DNA-directed RNA polymerase subunit beta' OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_PARDP (DNA-directed RNA polymerase subunit beta' OS=Paracoccus denitrificans (strain Pd 1222) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITEU (DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas europaea GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSLPSRLGLVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MICLC (DNA-directed RNA polymerase subunit beta' OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCE+IFGP +   CACG Y+ +   +     CE+CGVE   S + R +MG  +L  PVTH+W  K +PS +  LLD   K+
Sbjct:   45 GLFCEKIFGPTRDWECACGKYKRV---RFKGIICERCGVEVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_MAGSA (DNA-directed RNA polymerase subunit beta' OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  L D  LK+
Sbjct:   55 GLFCARIFGPIKDYECLCGKYKRM---KYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLCDMTLKD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_JANSC (DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain CCS1) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE     + R +MG  +L  PV H+W LK LPS I  +LD  L++
Sbjct:   57 GLFCARIFGPIKDYECLCGKYKRM---KYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRD 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_HALHL (DNA-directed RNA polymerase subunit beta' OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpoC PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   + + R +MG   L  PV H+W LK LPS I  LLD  L++
Sbjct:   56 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVVCEKCGVEVTVAKVRRERMGHIDLASPVAHIWFLKSLPSRIGLLLDMTLRD 135          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_GRABC (DNA-directed RNA polymerase subunit beta' OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC RIFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS I  ++D  LKE
Sbjct:   55 GLFCARIFGPIKDYECLCGKYKRM---KFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRIGLMVDLTLKE 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CORJK (DNA-directed RNA polymerase subunit beta' OS=Corynebacterium jeikeium (strain K411) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGP +   C CG Y+ +   +     CE+CGVE   S + R +MG  +L  PVTH+W  K +PS +  LLD   K+
Sbjct:   45 GLFCERIFGPTRDWECGCGKYKRV---RYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKD 124          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_RHOS47.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Rhodo... [more]
RPOC_RHOS17.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Rhodo... [more]
RPOC_PARDP7.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Parac... [more]
RPOC_NITEU7.132e-1444.58DNA-directed RNA polymerase subunit beta' OS=Nitro... [more]
RPOC_MICLC7.132e-1444.58DNA-directed RNA polymerase subunit beta' OS=Micro... [more]
RPOC_MAGSA7.132e-1448.19DNA-directed RNA polymerase subunit beta' OS=Magne... [more]
RPOC_JANSC7.132e-1446.99DNA-directed RNA polymerase subunit beta' OS=Janna... [more]
RPOC_HALHL7.132e-1445.78DNA-directed RNA polymerase subunit beta' OS=Halor... [more]
RPOC_GRABC7.132e-1448.19DNA-directed RNA polymerase subunit beta' OS=Granu... [more]
RPOC_CORJK7.132e-1444.58DNA-directed RNA polymerase subunit beta' OS=Coryn... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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