CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURPS (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURPP (DNA-directed RNA polymerase subunit beta' OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURP8 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURP6 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 668) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURP1 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 1710b) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURP0 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia pseudomallei (strain 1106a) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURMS (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain SAVP1) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURMA (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURM9 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain NCTC 10229) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURM7 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia mallei (strain NCTC 10247) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_BURPS9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURPP9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP89.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP69.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP19.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURP09.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURMS9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURMA9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURM99.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURM79.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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