CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURM1 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCM (DNA-directed RNA polymerase subunit beta' OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCJ (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCH (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain HI2424) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCC (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain MC0-3) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCA (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain AU 1054) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURA4 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia ambifaria (strain MC40-6) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGPIK   C CG Y+ +   K     CE+CGVE   + + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AQUAE (DNA-directed RNA polymerase subunit beta' OS=Aquifex aeolicus GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237
            GLFC +IFGPIK   C CG YR    ++ + + CE+CGVE   S + R + G  +L  PV H+W LK  PS I  LL+
Sbjct:   49 GLFCAKIFGPIKDYECLCGKYR---GKRYEGKICEKCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGTLLN 123          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_VESOH (DNA-directed RNA polymerase subunit beta' OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC ++FGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  L+D  LK+
Sbjct:   55 GLFCAKVFGPMKDFECLCGKYKRM---KFRNVVCEKCGVEVTYSKVRRERMGHIELAAPVAHIWYLKSLPSRLGLLMDMTLKD 134          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITEC (DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas eutropha (strain C91) GN=rpoC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFC +IFGP+K   C CG Y+ +   K     CE+CGVE   S + R +MG  +L  PV H+W LK LPS +  +LD  L++
Sbjct:   55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSLPSRLGLVLDITLRD 134          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC_BURM19.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURCM9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURCJ9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURCH9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURCC9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURCA9.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_BURA49.315e-1444.58DNA-directed RNA polymerase subunit beta' OS=Burkh... [more]
RPOC_AQUAE9.315e-1446.15DNA-directed RNA polymerase subunit beta' OS=Aquif... [more]
RPOC_VESOH1.217e-1344.58DNA-directed RNA polymerase subunit beta' OS=Vesic... [more]
RPOC_NITEC1.217e-1344.58DNA-directed RNA polymerase subunit beta' OS=Nitro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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