CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURM1 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCM (DNA-directed RNA polymerase subunit beta' OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCJ (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCH (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain HI2424) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCC (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain MC0-3) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURCA (DNA-directed RNA polymerase subunit beta' OS=Burkholderia cenocepacia (strain AU 1054) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_BURA4 (DNA-directed RNA polymerase subunit beta' OS=Burkholderia ambifaria (strain MC40-6) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_AQUAE (DNA-directed RNA polymerase subunit beta' OS=Aquifex aeolicus GN=rpoC PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFC +IFGPIK C CG YR ++ + + CE+CGVE S + R + G +L PV H+W LK PS I LL+ Sbjct: 49 GLFCAKIFGPIKDYECLCGKYR---GKRYEGKICEKCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGTLLN 123
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_VESOH (DNA-directed RNA polymerase subunit beta' OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC ++FGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + L+D LK+ Sbjct: 55 GLFCAKVFGPMKDFECLCGKYKRM---KFRNVVCEKCGVEVTYSKVRRERMGHIELAAPVAHIWYLKSLPSRLGLLMDMTLKD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_NITEC (DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas eutropha (strain C91) GN=rpoC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13 Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGP+K C CG Y+ + K CE+CGVE S + R +MG +L PV H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPVKDYECLCGKYKRL---KHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSLPSRLGLVLDITLRD 134 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |