CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_STAAC (DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus (strain COL) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCERIFGP K C+CG Y+ + + C++CGVE S + R +MG +L PV+H+W K +PS + LLD Sbjct: 45 GLFCERIFGPTKDWECSCGKYKRV---RYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLD 119
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_STAAB (DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCERIFGP K C+CG Y+ + + C++CGVE S + R +MG +L PV+H+W K +PS + LLD Sbjct: 45 GLFCERIFGPTKDWECSCGKYKRV---RYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLD 119
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_STAA8 (DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoC PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCERIFGP K C+CG Y+ + + C++CGVE S + R +MG +L PV+H+W K +PS + LLD Sbjct: 45 GLFCERIFGPTKDWECSCGKYKRV---RYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLD 119
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_STAA3 (DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus (strain USA300) GN=rpoC PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCERIFGP K C+CG Y+ + + C++CGVE S + R +MG +L PV+H+W K +PS + LLD Sbjct: 45 GLFCERIFGPTKDWECSCGKYKRV---RYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLD 119
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_METPP (DNA-directed RNA polymerase subunit beta' OS=Methylibium petroleiphilum (strain PM1) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG L P H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_LEPCP (DNA-directed RNA polymerase subunit beta' OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG L P H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_DEIRA (DNA-directed RNA polymerase subunit beta' OS=Deinococcus radiodurans GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLF ERIFGPIK CACG Y+ ++ + + CE+CGVE S + R +MG L P H+W +K PS I LLD Sbjct: 42 GLFDERIFGPIKDYECACGKYK---RQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDSPSKIGTLLD 116
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_CYAME (Bifunctional DNA-directed RNA polymerase subunit beta'-beta'' OS=Cyanidioschyzon merolae GN=rpoC PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13 Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGP+K C CG Y+ + + CE+CGVE +S + R +MG L V+HVW LK PSY+A L+ E Sbjct: 49 GLFCERIFGPVKDWECHCGKYKKV---RYKGIVCERCGVEVTESKVRRHRMGYIDLAAVVSHVWYLKGPPSYLALFLNMSSSE 128
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_VARPS (DNA-directed RNA polymerase subunit beta' OS=Variovorax paradoxus (strain S110) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13 Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFC +IFGPIK C CG Y+ + K CE+CGVE + + R +MG L P H+W LK LPS + +LD L++ Sbjct: 55 GLFCAKIFGPIKDYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRD 134
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC_SYNWW (DNA-directed RNA polymerase subunit beta' OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpoC PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLD 237 GLFCE+IFGP+K C CG Y+ + + C++CGVE S + R +MG +L PV H+W LK +PS + LLD Sbjct: 53 GLFCEKIFGPVKDWECHCGKYKRV---RHKGIVCDRCGVEVTTSKVRRERMGHIELAAPVCHIWYLKGIPSRMGLLLD 127 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |