CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENAR (DNA-directed RNA polymerase subunit beta' OS=Oenothera argillicola GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOTJA (DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGIC CGNYR+IGD+K++P+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICTCGNYRVIGDKKDEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+I +EKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIAN LDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIRNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PIPCE (DNA-directed RNA polymerase subunit beta' OS=Piper cenocladum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37
Identity = 71/83 (85.54%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR+IGDEKEDP FCEQCGVEF DS   R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERISGPIKSGICACGNYRVIGDEKEDPNFCEQCGVEFADSRARRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AMBTC (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVE VDS + R QMG  KL CPVTHVW LKRLPSYIANL D+PLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLSDRPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSHI (DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG++KE P+FCEQCGVEFVDS + R QMG  +L CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSBA (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG++KE P+FCEQCGVEFVDS + R QMG  +L CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSEX (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKE+ +FCEQCGVEFVDS + R +MG  KL CPVTHVW LKRLPSYIAN+LDKPLKE
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGDEKEEQKFCEQCGVEFVDSRIRRYRMGCIKLACPVTHVWYLKRLPSYIANILDKPLKE 143          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NYMAL (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.996e-37
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKE+P+FCEQCGVE VDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGGEKEEPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.831e-37
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR+IG EKEDP+FCEQCGVEFVDS + R QMG  KL CP THVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERISGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_OENAR2.061e-3784.34DNA-directed RNA polymerase subunit beta' OS=Oenot... [more]
RPOC1_LOTJA2.061e-3783.13DNA-directed RNA polymerase subunit beta' OS=Lotus... [more]
RPOC1_SILLA3.515e-3784.34DNA-directed RNA polymerase subunit beta' OS=Silen... [more]
RPOC1_PIPCE3.515e-3785.54DNA-directed RNA polymerase subunit beta' OS=Piper... [more]
RPOC1_AMBTC3.515e-3784.34DNA-directed RNA polymerase subunit beta' OS=Ambor... [more]
RPOC1_GOSHI4.591e-3783.13DNA-directed RNA polymerase subunit beta' OS=Gossy... [more]
RPOC1_GOSBA4.591e-3783.13DNA-directed RNA polymerase subunit beta' OS=Gossy... [more]
RPOC1_CUSEX4.591e-3783.13DNA-directed RNA polymerase subunit beta' OS=Cuscu... [more]
RPOC1_NYMAL5.996e-3784.34DNA-directed RNA polymerase subunit beta' OS=Nymph... [more]
RPOC1_DIOEL7.831e-3784.34DNA-directed RNA polymerase subunit beta' OS=Diosc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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