CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_OENAR (DNA-directed RNA polymerase subunit beta' OS=Oenothera argillicola GN=rpoC1 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37 Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACG YR+IGD+KEDP FCEQCGVEFVDS + R QMG KL CP THVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOTJA (DNA-directed RNA polymerase subunit beta' OS=Lotus japonicus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.061e-37 Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGIC CGNYR+IGD+K++P+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICTCGNYRVIGDKKDEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37 Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+I +EKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIAN LDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIRNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PIPCE (DNA-directed RNA polymerase subunit beta' OS=Piper cenocladum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37 Identity = 71/83 (85.54%), Postives = 72/83 (86.75%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERI GPIKSGICACGNYR+IGDEKEDP FCEQCGVEF DS R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERISGPIKSGICACGNYRVIGDEKEDPNFCEQCGVEFADSRARRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AMBTC (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda GN=rpoC1 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.515e-37 Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVE VDS + R QMG KL CPVTHVW LKRLPSYIANL D+PLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLSDRPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSHI (DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37 Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG++KE P+FCEQCGVEFVDS + R QMG +L CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSBA (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense GN=rpoC1 PE=3 SV=2) HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37 Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG++KE P+FCEQCGVEFVDS + R QMG +L CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIRRYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSEX (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata GN=rpoC1 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 4.591e-37 Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKE+ +FCEQCGVEFVDS + R +MG KL CPVTHVW LKRLPSYIAN+LDKPLKE Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEQKFCEQCGVEFVDSRIRRYRMGCIKLACPVTHVWYLKRLPSYIANILDKPLKE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NYMAL (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba GN=rpoC1 PE=3 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 5.996e-37 Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKE+P+FCEQCGVE VDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGGEKEEPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 7.831e-37 Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERI GPIKSGICACGNYR+IG EKEDP+FCEQCGVEFVDS + R QMG KL CP THVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERISGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLKRLPSYIANLLDKPLKE 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |