CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MANES (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.023e-36
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+I +EKED +FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIRNEKEDQKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_HELAN (DNA-directed RNA polymerase subunit beta' OS=Helianthus annuus GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36
Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG  KL  PV HVW LKRLPSYI NLLDKPL E
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GUIAB (DNA-directed RNA polymerase subunit beta' OS=Guizotia abyssinica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36
Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG  KL  PV HVW LKRLPSYI NLLDKPL E
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNE 143          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ILLOL (DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.745e-36
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR+IGDEKE P+FCEQCGVE VDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   61 GLFCERISGPIKSGICACGNYRVIGDEKEGPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_FAGEA (DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.745e-36
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN+RIIGDE E+P+FCEQC VEFVDS + R QMG  KL CPVTHVW LKRLPSYIAN LDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNFRIIGDETEEPKFCEQCAVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NUPAD (DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IG EKE+P+FCEQCGVE VDS + R QMG  KL CPVTHVW LKRLPSYIANL DKPLKE
Sbjct:   61 GLFCERIFGPIKSGICACGNYRVIGGEKEEPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLSDKPLKE 143          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DAUCA (DNA-directed RNA polymerase subunit beta' OS=Daucus carota GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGD+K+D + CEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDKKKDRKSCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LACSA (DNA-directed RNA polymerase subunit beta' OS=Lactuca sativa GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.629e-36
Identity = 69/83 (83.13%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG  KL  PV HVW LKRLPSYI  LLDKPL E
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVTLLDKPLNE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.131e-35
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+I D+K+DP+FCEQCGVEF+DS + R QMG  KL C VTH W LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHAWYLKRLPSYIANLLDKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAAO (DNA-directed RNA polymerase subunit beta' OS=Phalaenopsis aphrodite subsp. formosana GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.131e-35
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERI GPIKSGICACGNYR IG EKEDP+FCE+CGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPL+E
Sbjct:   54 GLFCERISGPIKSGICACGNYRGIGTEKEDPKFCEECGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLRE 136          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_MANES1.023e-3684.34DNA-directed RNA polymerase subunit beta' OS=Manih... [more]
RPOC1_HELAN1.336e-3684.34DNA-directed RNA polymerase subunit beta' OS=Helia... [more]
RPOC1_GUIAB1.336e-3684.34DNA-directed RNA polymerase subunit beta' OS=Guizo... [more]
RPOC1_ILLOL1.745e-3684.34DNA-directed RNA polymerase subunit beta' OS=Illic... [more]
RPOC1_FAGEA1.745e-3683.13DNA-directed RNA polymerase subunit beta' OS=Fagop... [more]
RPOC1_NUPAD2.976e-3683.13DNA-directed RNA polymerase subunit beta' OS=Nupha... [more]
RPOC1_DAUCA2.976e-3683.13DNA-directed RNA polymerase subunit beta' OS=Daucu... [more]
RPOC1_LACSA6.629e-3683.13DNA-directed RNA polymerase subunit beta' OS=Lactu... [more]
RPOC1_PHAVU1.131e-3580.72DNA-directed RNA polymerase subunit beta' OS=Phase... [more]
RPOC1_PHAAO1.131e-3583.13DNA-directed RNA polymerase subunit beta' OS=Phala... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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