CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MANES (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta GN=rpoC1 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.023e-36 Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+I +EKED +FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIRNEKEDQKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_HELAN (DNA-directed RNA polymerase subunit beta' OS=Helianthus annuus GN=rpoC1 PE=3 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36 Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG KL PV HVW LKRLPSYI NLLDKPL E Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_GUIAB (DNA-directed RNA polymerase subunit beta' OS=Guizotia abyssinica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36 Identity = 70/83 (84.34%), Postives = 72/83 (86.75%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG KL PV HVW LKRLPSYI NLLDKPL E Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVNLLDKPLNE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ILLOL (DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.745e-36 Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERI GPIKSGICACGNYR+IGDEKE P+FCEQCGVE VDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 61 GLFCERISGPIKSGICACGNYRVIGDEKEGPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_FAGEA (DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC1 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.745e-36 Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN+RIIGDE E+P+FCEQC VEFVDS + R QMG KL CPVTHVW LKRLPSYIAN LDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNFRIIGDETEEPKFCEQCAVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NUPAD (DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36 Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IG EKE+P+FCEQCGVE VDS + R QMG KL CPVTHVW LKRLPSYIANL DKPLKE Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGGEKEEPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLSDKPLKE 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_DAUCA (DNA-directed RNA polymerase subunit beta' OS=Daucus carota GN=rpoC1 PE=3 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36 Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGD+K+D + CEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDKKKDRKSCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LACSA (DNA-directed RNA polymerase subunit beta' OS=Lactuca sativa GN=rpoC1 PE=3 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 6.629e-36 Identity = 69/83 (83.13%), Postives = 71/83 (85.54%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDPQFCEQCGVEFVDS + R QMG KL PV HVW LKRLPSYI LLDKPL E Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLAYPVMHVWYLKRLPSYIVTLLDKPLNE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.131e-35 Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+I D+K+DP+FCEQCGVEF+DS + R QMG KL C VTH W LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHAWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAAO (DNA-directed RNA polymerase subunit beta' OS=Phalaenopsis aphrodite subsp. formosana GN=rpoC1 PE=3 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 1.131e-35 Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERI GPIKSGICACGNYR IG EKEDP+FCE+CGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPL+E Sbjct: 54 GLFCERISGPIKSGICACGNYRGIGTEKEDPKFCEECGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANLLDKPLRE 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |