CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.290e-35
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+I D+K+DP+FCEQCGVEF+DS + R QMG  KL C VTHVW LKRLPSYIANLLDK LKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHVWYLKRLPSYIANLLDKSLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_TOBAC (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tabacum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.250e-34
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1
Query:   25 FGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            FGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   60 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 135          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_WHEAT (DNA-directed RNA polymerase subunit beta' OS=Triticum aestivum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOLPR (DNA-directed RNA polymerase subunit beta' OS=Lolium perenne GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AGRST (DNA-directed RNA polymerase subunit beta' OS=Agrostis stolonifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.405e-32
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRPSGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CYCTA (DNA-directed RNA polymerase subunit beta' OS=Cycas taitungensis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.447e-32
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            G FCERIFGPIKSG+CACGN R+IG+EKE+ +FCEQCGVEFVDS + R +MG  +L CPV HVW  KRLPSYIANLL KPLKE
Sbjct:   54 GSFCERIFGPIKSGVCACGNSRVIGNEKENSKFCEQCGVEFVDSRIRRYRMGYIELACPVVHVWYSKRLPSYIANLLAKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_HORVU (DNA-directed RNA polymerase subunit beta' OS=Hordeum vulgare GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.808e-32
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGIC CGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICGCGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BRADI (DNA-directed RNA polymerase subunit beta' OS=Brachypodium distachyon GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.808e-32
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R  G E ED +FC++CGVEF DS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFADSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSJ (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. japonica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKS ICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSI (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. indica GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKS ICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_SOYBN3.290e-3580.72DNA-directed RNA polymerase subunit beta' OS=Glyci... [more]
RPOC1_TOBAC1.250e-3486.84DNA-directed RNA polymerase subunit beta' OS=Nicot... [more]
RPOC1_WHEAT1.996e-3277.11DNA-directed RNA polymerase subunit beta' OS=Triti... [more]
RPOC1_LOLPR1.996e-3277.11DNA-directed RNA polymerase subunit beta' OS=Loliu... [more]
RPOC1_AGRST3.405e-3277.11DNA-directed RNA polymerase subunit beta' OS=Agros... [more]
RPOC1_CYCTA4.447e-3274.70DNA-directed RNA polymerase subunit beta' OS=Cycas... [more]
RPOC1_HORVU5.808e-3275.90DNA-directed RNA polymerase subunit beta' OS=Horde... [more]
RPOC1_BRADI5.808e-3275.90DNA-directed RNA polymerase subunit beta' OS=Brach... [more]
RPOC1_ORYSJ1.690e-3175.90DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_ORYSI1.690e-3175.90DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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