CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 3.290e-35 Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+I D+K+DP+FCEQCGVEF+DS + R QMG KL C VTHVW LKRLPSYIANLLDK LKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHVWYLKRLPSYIANLLDKSLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_TOBAC (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tabacum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.250e-34 Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1 Query: 25 FGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 FGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 60 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 135
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_WHEAT (DNA-directed RNA polymerase subunit beta' OS=Triticum aestivum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32 Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_LOLPR (DNA-directed RNA polymerase subunit beta' OS=Lolium perenne GN=rpoC1 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32 Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_AGRST (DNA-directed RNA polymerase subunit beta' OS=Agrostis stolonifera GN=rpoC1 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.405e-32 Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRPSGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CYCTA (DNA-directed RNA polymerase subunit beta' OS=Cycas taitungensis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.447e-32 Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 G FCERIFGPIKSG+CACGN R+IG+EKE+ +FCEQCGVEFVDS + R +MG +L CPV HVW KRLPSYIANLL KPLKE Sbjct: 54 GSFCERIFGPIKSGVCACGNSRVIGNEKENSKFCEQCGVEFVDSRIRRYRMGYIELACPVVHVWYSKRLPSYIANLLAKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_HORVU (DNA-directed RNA polymerase subunit beta' OS=Hordeum vulgare GN=rpoC1 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.808e-32 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGIC CGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICGCGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_BRADI (DNA-directed RNA polymerase subunit beta' OS=Brachypodium distachyon GN=rpoC1 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.808e-32 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R G E ED +FC++CGVEF DS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASGAENEDERFCQKCGVEFADSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSJ (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. japonica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKS ICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSI (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. indica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKS ICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |