CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSA (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKS ICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYNI (DNA-directed RNA polymerase subunit beta' OS=Oryza nivara GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKS ICACGN R G E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SORBI (DNA-directed RNA polymerase subunit beta' OS=Sorghum bicolor GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SACOF (DNA-directed RNA polymerase subunit beta' OS=Saccharum officinarum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SACHY (DNA-directed RNA polymerase subunit beta' OS=Saccharum hybrid GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MAIZE (DNA-directed RNA polymerase subunit beta' OS=Zea mays GN=rpoC1 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31 Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGN R E ED +FC++CGVEFVDS + R QMG KL CPVTHVW LK LPSYIANLLDKPLK+ Sbjct: 54 GLFCERIFGPIKSGICACGNSRASVRENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ADICA (DNA-directed RNA polymerase subunit beta' OS=Adiantum capillus-veneris GN=rpoC1 PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.868e-30 Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGP KSG+CACGN R + DE E +FC+ CGVEF DS + R +MG KL CPVTHVW LKR+PSYIANLL KPLKE Sbjct: 54 GLFCERIFGPTKSGVCACGNCRSVNDEGESSRFCKHCGVEFTDSRVRRYRMGYIKLACPVTHVWFLKRIPSYIANLLAKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ANTFO (DNA-directed RNA polymerase subunit beta' OS=Anthoceros formosae GN=rpoC1 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30 Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACG YR I +++E + CEQCGVEF +S + R +MG +L CPVTHVW LKRLPSYIANLL KPLKE Sbjct: 54 GLFCERIFGPIKSGICACGKYRSIENQREYSKICEQCGVEFTESRVRRYRMGYIELACPVTHVWYLKRLPSYIANLLAKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MARPO (DNA-directed RNA polymerase subunit beta' OS=Marchantia polymorpha GN=rpoC1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.436e-30 Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCE+IFGPIKSGICACG Y+ I +KE+ +FCEQCGVEF++S + R +MG KL C VTHVW LKRLPSYIANLL KPLKE Sbjct: 54 GLFCEKIFGPIKSGICACGKYQGIEKKKENIKFCEQCGVEFIESRIRRYRMGYIKLACSVTHVWYLKRLPSYIANLLAKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHYPA (DNA-directed RNA polymerase subunit beta' OS=Physcomitrella patens GN=rpoC1 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.272e-30 Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACG Y+II ++ +FCEQCGVEFV+S + R +MG KL CPVTHVW LKRLPSYIANLL KPLKE Sbjct: 54 GLFCERIFGPIKSGICACGKYQII---EKYSKFCEQCGVEFVESRVRRYRMGYIKLACPVTHVWYLKRLPSYIANLLAKPLKE 133 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |