CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSA (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKS ICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYNI (DNA-directed RNA polymerase subunit beta' OS=Oryza nivara GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKS ICACGN R  G E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SORBI (DNA-directed RNA polymerase subunit beta' OS=Sorghum bicolor GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R    E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SACOF (DNA-directed RNA polymerase subunit beta' OS=Saccharum officinarum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R    E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SACHY (DNA-directed RNA polymerase subunit beta' OS=Saccharum hybrid GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R    E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASVAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MAIZE (DNA-directed RNA polymerase subunit beta' OS=Zea mays GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.207e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGN R    E ED +FC++CGVEFVDS + R QMG  KL CPVTHVW LK LPSYIANLLDKPLK+
Sbjct:   54 GLFCERIFGPIKSGICACGNSRASVRENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKK 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ADICA (DNA-directed RNA polymerase subunit beta' OS=Adiantum capillus-veneris GN=rpoC1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.868e-30
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGP KSG+CACGN R + DE E  +FC+ CGVEF DS + R +MG  KL CPVTHVW LKR+PSYIANLL KPLKE
Sbjct:   54 GLFCERIFGPTKSGVCACGNCRSVNDEGESSRFCKHCGVEFTDSRVRRYRMGYIKLACPVTHVWFLKRIPSYIANLLAKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ANTFO (DNA-directed RNA polymerase subunit beta' OS=Anthoceros formosae GN=rpoC1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG YR I +++E  + CEQCGVEF +S + R +MG  +L CPVTHVW LKRLPSYIANLL KPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGKYRSIENQREYSKICEQCGVEFTESRVRRYRMGYIELACPVTHVWYLKRLPSYIANLLAKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_MARPO (DNA-directed RNA polymerase subunit beta' OS=Marchantia polymorpha GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.436e-30
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCE+IFGPIKSGICACG Y+ I  +KE+ +FCEQCGVEF++S + R +MG  KL C VTHVW LKRLPSYIANLL KPLKE
Sbjct:   54 GLFCEKIFGPIKSGICACGKYQGIEKKKENIKFCEQCGVEFIESRIRRYRMGYIKLACSVTHVWYLKRLPSYIANLLAKPLKE 136          
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PHYPA (DNA-directed RNA polymerase subunit beta' OS=Physcomitrella patens GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.272e-30
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACG Y+II   ++  +FCEQCGVEFV+S + R +MG  KL CPVTHVW LKRLPSYIANLL KPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGKYQII---EKYSKFCEQCGVEFVESRVRRYRMGYIKLACPVTHVWYLKRLPSYIANLLAKPLKE 133          
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_ORYSA1.690e-3175.90DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_ORYNI1.690e-3175.90DNA-directed RNA polymerase subunit beta' OS=Oryza... [more]
RPOC1_SORBI2.207e-3175.90DNA-directed RNA polymerase subunit beta' OS=Sorgh... [more]
RPOC1_SACOF2.207e-3175.90DNA-directed RNA polymerase subunit beta' OS=Sacch... [more]
RPOC1_SACHY2.207e-3175.90DNA-directed RNA polymerase subunit beta' OS=Sacch... [more]
RPOC1_MAIZE2.207e-3175.90DNA-directed RNA polymerase subunit beta' OS=Zea m... [more]
RPOC1_ADICA1.868e-3071.08DNA-directed RNA polymerase subunit beta' OS=Adian... [more]
RPOC1_ANTFO3.187e-3072.29DNA-directed RNA polymerase subunit beta' OS=Antho... [more]
RPOC1_MARPO5.436e-3072.29DNA-directed RNA polymerase subunit beta' OS=March... [more]
RPOC1_PHYPA9.272e-3074.70DNA-directed RNA polymerase subunit beta' OS=Physc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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