CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PELHO (DNA-directed RNA polymerase subunit beta' OS=Pelargonium hortorum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.272e-30 Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSG+CACG R IGDEKE FCE+CGVEFVDS + R QMG KL P+ HVW LKR+PSYIANLLD+ +K+ Sbjct: 61 GLFCERIFGPIKSGVCACGESRKIGDEKEKRTFCEKCGVEFVDSRIRRYQMGYIKLASPMAHVWYLKRIPSYIANLLDEKIKD 143
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PSINU (DNA-directed RNA polymerase subunit beta' OS=Psilotum nudum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29 Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSG CACGNY+ + + KE FC+QCGVEF +S + R QMG +L CPVTHVW LKRLPSYIANLL KPL + Sbjct: 54 GLFCERIFGPIKSGFCACGNYQAVDNGKEFSSFCKQCGVEFTESRVRRYQMGYIELACPVTHVWYLKRLPSYIANLLAKPLND 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ANGEV (DNA-directed RNA polymerase subunit beta' OS=Angiopteris evecta GN=rpoC1 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29 Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCE+IFGPI+SGIC+CGN + + ++KE FC+QCGVEF DS + R +MG KL CPVTHVW LKRLPSYIAN+L KPLKE Sbjct: 54 GLFCEKIFGPIRSGICSCGNSKSVDEKKEYSNFCKQCGVEFTDSRVRRYRMGYIKLACPVTHVWYLKRLPSYIANILAKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PINTH (DNA-directed RNA polymerase subunit beta' OS=Pinus thunbergii GN=rpoC1 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 4.602e-29 Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 G FCERIFGPIKSG+C+CGN IG+EK D +FC QCGVEFVDS + R QMG KL CPV HVW LKRLPSYIANLL K KE Sbjct: 54 GSFCERIFGPIKSGVCSCGNSPGIGNEKIDAKFCTQCGVEFVDSRIRRYQMGYIKLACPVVHVWYLKRLPSYIANLLAKTRKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_PINKO (DNA-directed RNA polymerase subunit beta' OS=Pinus koraiensis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.749e-28 Identity = 60/83 (72.29%), Postives = 64/83 (77.11%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 G FCERIFGPIKS +CACGN IG+EK D +FC QCGVEFVDS + R QMG KL CPV HVW LKRLPSYIANLL K KE Sbjct: 54 GSFCERIFGPIKSRVCACGNSPGIGNEKIDSKFCTQCGVEFVDSRIRRYQMGYIKLACPVVHVWYLKRLPSYIANLLAKTRKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ANEMR (DNA-directed RNA polymerase subunit beta' OS=Aneura mirabilis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 8.123e-26 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLF ERIFGP++SG+C CG Y+ I KE +FCE CGV+ S + R +MG +L CPVTHVW LKRLPS IANLLDKPLKE Sbjct: 54 GLFRERIFGPVRSGVCICGRYKGIASGKETTKFCEHCGVDLTRSRIRRYRMGYIELACPVTHVWYLKRLPSCIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ZYGCR (DNA-directed RNA polymerase subunit beta' OS=Zygnema circumcarinatum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.001e-24 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCER+FGPIKSG+CACG Y+ K+ P++CE+CGVEF ++ + R +MG L CPVTHVW LK PS IA LL++PL++ Sbjct: 54 GLFCERVFGPIKSGVCACGKYQGTISTKDSPKYCEKCGVEFTEARVRRHRMGYIDLQCPVTHVWYLKNRPSVIARLLNQPLQD 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CHAGL (DNA-directed RNA polymerase subunit beta' OS=Chaetosphaeridium globosum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 9.929e-24 Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACG Y + +FC+QCGVEF DS + R +MG +L P TH+W LKRLPS+IA LL LKE Sbjct: 54 GLFCERIFGPIKSGICACGKYHGFVKNLPEVKFCKQCGVEFTDSKVRRYRMGYIQLAYPATHIWYLKRLPSHIATLLKMSLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_HUPLU (DNA-directed RNA polymerase subunit beta' OS=Huperzia lucidula GN=rpoC1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23 Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRII---GDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 G+F E+IFGPI++G+CACG Y+ +E+ED FC++CGVEFV+S + R +MG +L C VTHVW L+ +PSYIA +L KPL+E Sbjct: 52 GIFSEKIFGPIQTGVCACGKYKKQVEDEEEEEDSNFCKECGVEFVESRVRRYRMGYIRLACAVTHVWYLRNIPSYIATILSKPLQE 137
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CHAVU (DNA-directed RNA polymerase subunit beta' OS=Chara vulgaris GN=rpoC1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23 Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCE+IFGPIKSG CACG Y I ++ E +FC++C VEF S + R +MG LGCPV HVW LK PS+IANLL + LK+ Sbjct: 54 GLFCEKIFGPIKSGRCACGKYERIPEQGEGKKFCKKCWVEFTYSRVRRYRMGYISLGCPVAHVWYLKSTPSHIANLLGQKLKD 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |