CK937603

Overview
NameCK937603
Unique NameCK937603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937603_ssr536 microsatellite CK937603_ssr536:536..547. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937603_ssr673 microsatellite CK937603_ssr673:673..684. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX3_ORYSJ (WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. japonica GN=WOX3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 440
            TRW PT EQ+ ILE +YR G+RTPNA +I+QITA L  YG+IEGKNVFYWFQNHKARERQ+ +R
Sbjct:    7 TRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRR 70          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX3_ORYSI (WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica GN=WOX3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 440
            TRW PT EQ+ ILE +YR G+RTPNA +I+QITA L  YG+IEGKNVFYWFQNHKARERQ+ +R
Sbjct:    7 TRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRR 70          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX3B_MAIZE (WUSCHEL-related homeobox 3B OS=Zea mays GN=WOX3B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 440
            TRW PT EQ+ ILE +YR G+RTPNA +I+QITA L  YG+IEGKNVFYWFQNHKARERQ+ +R
Sbjct:    7 TRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRR 70          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX3A_MAIZE (WUSCHEL-related homeobox 3A OS=Zea mays GN=WOX3A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 440
            TRW PT EQ+ ILE +YR G+RTPNA +I+QITA L  YG+IEGKNVFYWFQNHKARERQ+ +R
Sbjct:    7 TRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRR 70          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX1B_ORYSJ (WUSCHEL-related homeobox 1B OS=Oryza sativa subsp. japonica GN=WOX1B PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  240 PGGTRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPA-ATASFTTTISL 512
            P GTRW PT EQI IL E+ Y  G+R+PN++QI++I A L +YG+IEGKNVFYWFQNHKARERQK++  +L ++      A A AS    +SL
Sbjct:   31 PSGTRWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKKRLTTLDVTTTTAAAADADASHLAVLSL 123          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX1A_ORYSJ (WUSCHEL-related homeobox 1A OS=Oryza sativa subsp. japonica GN=WOX1A PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  240 PGGTRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPA-ATASFTTTISL 512
            P GTRW PT EQI IL E+ Y  G+R+PN++QI++I A L +YG+IEGKNVFYWFQNHKARERQK++  +L ++      A A AS    +SL
Sbjct:   31 PSGTRWTPTTEQIKILRELYYSCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKKRLTTLDVTTTTAAAADADASHLAVLSL 123          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX3_ARATH (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.159e-21
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  249 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 440
            TRW PT EQ+ ILE +YR G+RTPNA QI+QITA L  YG+IEGKNVFYWFQNHKAR+RQK ++
Sbjct:    7 TRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRK 70          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX5_ARATH (WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana GN=WOX5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  243 GGT-----RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPAATASF 494
            GGT     RWNPT EQ+ IL  L+R G+RTP   QI++I+ +L  YGKIE KNVFYWFQNHKARERQK+++ S+   H    P+    F
Sbjct:   16 GGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQKRRKISIDFDHHHHQPSTRDVF 104          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WUS_PETHY (Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  210 KRNPPQVETHPGGTRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 437
            K N          TRW PT +QI IL ++ Y  G+R+P A+QI++I+A+L +YGKIEGKNVFYWFQNHKARERQK++
Sbjct:   33 KNNSSNFMCRQNSTRWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKR 109          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WUS_ARATH (Protein WUSCHEL OS=Arabidopsis thaliana GN=WUS PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  249 TRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTP 476
            TRW PT EQI IL E+ Y   +R+P A QI++ITA+L ++GKIEGKNVFYWFQNHKARERQK++ N   ++    +P
Sbjct:   37 TRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRFNGTNMTTPSSSP 113          
The following BLAST results are available for this feature:
BLAST of CK937603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
WOX3_ORYSJ2.438e-2171.88WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. ... [more]
WOX3_ORYSI2.438e-2171.88WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. ... [more]
WOX3B_MAIZE2.438e-2171.88WUSCHEL-related homeobox 3B OS=Zea mays GN=WOX3B P... [more]
WOX3A_MAIZE2.438e-2171.88WUSCHEL-related homeobox 3A OS=Zea mays GN=WOX3A P... [more]
WOX1B_ORYSJ2.438e-2155.91WUSCHEL-related homeobox 1B OS=Oryza sativa subsp.... [more]
WOX1A_ORYSJ2.438e-2155.91WUSCHEL-related homeobox 1A OS=Oryza sativa subsp.... [more]
WOX3_ARATH4.159e-2171.88WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana... [more]
WOX5_ARATH1.580e-2053.93WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana... [more]
WUS_PETHY2.980e-1957.14Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=... [more]
WUS_ARATH2.980e-1958.44Protein WUSCHEL OS=Arabidopsis thaliana GN=WUS PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_F06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937603 ID=CK937603; Name=CK937603; organism=Citrus sinensis; type=EST; length=716bp
GGGGCTCCACCATGGGAAGCATGAAGGTTCATCAATTGGCACGTGGATTC
TGGGAGCATGCAGAGCCCTCTCTCACGCTTGGCTGTAAACGGTTACGCCC
TCTTGCTCCCAAGCTCCCCAACGCAGAAAGTACTAGTGTCTCTTCTTTCG
ATCTCAAGAGCCTCATTAGACCCGAAAGTGGTCCTAGAAAACTTGTGTCT
TCTGACGAGAAGAGAAATCCCCCTCAGGTGGAGACGCATCCGGGAGGCAC
AAGGTGGAATCCAACGCAGGAGCAGATAGGGATACTGGAGATGCTGTACA
GGGGAGGAATGCGAACACCGAATGCCCAACAAATAGAACAAATCACAGCG
CAGCTGGGCAAGTATGGGAAGATAGAAGGAAAGAACGTGTTCTACTGGTT
TCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGTCTTG
GTCTTAGCCATTGTCCGAGAACCCCAGCAGCCACCGCAAGTTTTACCACC
ACCATATCTCTGGACTCTAGGGAAAGAGAGGAAAGAGAAGAAGAAGAACT
CTGGAGCTCTTCCCTTTGCACCCGGAAGGCAGATGAAGGGGGTTTGATGA
GTAATTAATTGAGAAAAATTAAACTTTCGTTGAACTTTGTTCCATTATTA
ATTTTGTGATGGTGCTAGCTACAGCTAGCTAGCTACTTTGATGTGCTTTT
CTTTCTTTTCTTTGTA
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