CK937603

Overview
NameCK937603
Unique NameCK937603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937603_ssr536 microsatellite CK937603_ssr536:536..547. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937603_ssr673 microsatellite CK937603_ssr673:673..684. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WUS_ANTMA (Protein WUSCHEL OS=Antirrhinum majus GN=WUS PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  249 TRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 437
            TRW PT +QI IL ++ Y  G+R+P A+QI++I+A+L +YGKIEGKNVFYWFQNHKARERQK++
Sbjct:   39 TRWTPTTDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKR 102          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX9_ORYSJ (WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica GN=WOX9 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  252 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLS 458
            RWNPT EQ+ +L  L+R G+RTP+ +QI++I+  L  +GK+E KNVFYWFQNHKARER   K+   G S
Sbjct:   14 RWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHHHKKRRRGAS 82          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WUS_SOLLC (Protein WUSCHEL OS=Solanum lycopersicum GN=WUS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 41/64 (64.06%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  249 TRWNPTQEQIGIL-EMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 437
            +RW PT +QI IL ++ Y  G+R+P A+QI++I+A+L +YGKIEGKNVFYWFQNHKARERQK++
Sbjct:   25 SRWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKR 88          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX7_ARATH (WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana GN=WOX7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  243 GGT-----RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 446
            GGT     RWNPT EQ+ +L  L++ G+RTP+  QI++I+ +L  YGKIE KNVFYWFQNHKARERQK ++ S
Sbjct:   21 GGTGAKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQKCRKIS 93          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX12_ORYSJ (WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica GN=WOX12 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 56/153 (36.60%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   78 LGCKRLRPLAPKLPNAESTSVSSFDLKSLIRPESGPRK--LVSSDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSH----CPRTPAATASFTTTISLDS 518
            L C   +   P + N   +S SSF L       +G  K  L+SS  +      E  P   RWNP  EQI ILE ++  GM  P   +I +I  QL +YG++   NVFYWFQN K+  R K K  + G  H        P A+A  +T I L S
Sbjct:   16 LACNIQQQQQPDM-NGNGSSSSSFLLSPPTAATTGNGKPSLLSSGCEEGTRNPEPKP---RWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQNRKS--RTKNKLRAAGHHHHHGRAAALPRASAPPSTNIVLPS 162          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX9_ARATH (WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = 3
Query:  150 DLKSLIRPESGPRKLVSSDEKRNPPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK------QKRNSLGLSHCPRTPAATASFTTTISLDS 518
            D+ S + P +  R    S         E  P   RWNP  EQI ILE ++  GM  P  ++I +I AQL +YG++   NVFYWFQN K+R + K        ++SL  +     P  +AS +++ S  S
Sbjct:   24 DINSPLLPSASHRSSPFSSGCEVERSPEPKP---RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRLLHNHSKHSLPQTQPQPQPQPSASSSSSSSSSS 149          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  252 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHCPRTPAATASFTTT 503
            RW PT  Q+ ILE +Y+ G  TPN ++I++IT +L ++G+I  KNV++WFQN +AR ++KQ   +   S    + A  A+ TTT
Sbjct:   79 RWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQPPTTTITS----SQADDAAVTTT 158          
BLAST of CK937603 vs. ExPASy Swiss-Prot
Match: WOX7_ORYSJ (WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 3
Query:  252 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLG 452
            RWNP  EQI ILE ++  GM  P   +I +I  QL +YG++   NVFYWFQN K+R + K +    G
Sbjct:   69 RWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRSGGTG 135          
The following BLAST results are available for this feature:
BLAST of CK937603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
WUS_ANTMA8.671e-1965.63Protein WUSCHEL OS=Antirrhinum majus GN=WUS PE=2 S... [more]
WOX9_ORYSJ1.479e-1856.52WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. ... [more]
WUS_SOLLC1.932e-1864.06Protein WUSCHEL OS=Solanum lycopersicum GN=WUS PE=... [more]
WOX7_ARATH3.295e-1858.90WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana... [more]
WOX12_ORYSJ9.286e-1336.60WUSCHEL-related homeobox 12 OS=Oryza sativa subsp.... [more]
WOX9_ARATH1.584e-1234.88WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana... [more]
WOX10_ARATH2.069e-1242.86Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX7_ORYSJ1.341e-1146.27WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_F06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937603 ID=CK937603; Name=CK937603; organism=Citrus sinensis; type=EST; length=716bp
GGGGCTCCACCATGGGAAGCATGAAGGTTCATCAATTGGCACGTGGATTC
TGGGAGCATGCAGAGCCCTCTCTCACGCTTGGCTGTAAACGGTTACGCCC
TCTTGCTCCCAAGCTCCCCAACGCAGAAAGTACTAGTGTCTCTTCTTTCG
ATCTCAAGAGCCTCATTAGACCCGAAAGTGGTCCTAGAAAACTTGTGTCT
TCTGACGAGAAGAGAAATCCCCCTCAGGTGGAGACGCATCCGGGAGGCAC
AAGGTGGAATCCAACGCAGGAGCAGATAGGGATACTGGAGATGCTGTACA
GGGGAGGAATGCGAACACCGAATGCCCAACAAATAGAACAAATCACAGCG
CAGCTGGGCAAGTATGGGAAGATAGAAGGAAAGAACGTGTTCTACTGGTT
TCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGTCTTG
GTCTTAGCCATTGTCCGAGAACCCCAGCAGCCACCGCAAGTTTTACCACC
ACCATATCTCTGGACTCTAGGGAAAGAGAGGAAAGAGAAGAAGAAGAACT
CTGGAGCTCTTCCCTTTGCACCCGGAAGGCAGATGAAGGGGGTTTGATGA
GTAATTAATTGAGAAAAATTAAACTTTCGTTGAACTTTGTTCCATTATTA
ATTTTGTGATGGTGCTAGCTACAGCTAGCTAGCTACTTTGATGTGCTTTT
CTTTCTTTTCTTTGTA
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