CK937599

Overview
NameCK937599
Unique NameCK937599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937599_ssr39 microsatellite CK937599_ssr39:39..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: AK1CL_MOUSE (Aldo-keto reductase family 1 member C21 OS=Mus musculus GN=Akr1c21 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.869e-34
Identity = 78/199 (39.20%), Postives = 113/199 (56.78%), Query Frame = 1
Query:   97 VLNTGAKIPSVGLGT---WQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN-----LDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACV--XPAVNQVECHPSWQQQKLREFCK 663
            +LN G  IP +G GT    +            AI AG+ H D A +Y  E  +G  ++    DG V+RED++ TSK+W     PE V  +L+R+L+ LQ DY+DLYL+H+P+ +K G   F  +       D+ D+ +TW+AME   D+G  ++IGVSNF+ ++L  +L    +   P  NQVECHP   Q KL +FCK
Sbjct:    9 ILNDGNFIPVLGFGTALPLECPKSKAKELTKIAIDAGFHHFDSASVYNTEDHVGEAIRSKIADGTVRREDIFYTSKVWCTSLHPELVRASLERSLQKLQFDYVDLYLIHYPMALKPGEENFPVDEHGKLIFDRVDLCATWEAMEKCKDAGLTKSIGVSNFNYRQLEMILNKPGLKYKPVCNQVECHPYLNQMKLLDFCK 207          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: Y2408_MYCS2 (Uncharacterized oxidoreductase MSMEG_2408 OS=Mycobacterium smegmatis GN=MSMEG_2408 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.747e-34
Identity = 83/188 (44.15%), Postives = 109/188 (57.98%), Query Frame = 1
Query:   91 QFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLRE 654
            +  LN G  IP VGLG WQ+       AVAAA++AGYRHID A  Y NE E G    +   +  V RED+++ +KLWN+    +    A D +++ L +DYLDLYL+HWPV          PEN    D   T+KA   L D G+ R+IGVSNF  + L  L+E   + PAVNQ+E HP   QQ+LR+
Sbjct:    4 RITLNDGNSIPQVGLGVWQTPAEDTERAVAAALQAGYRHIDTAAAYRNETETG----RAIANSGVPREDIFLVTKLWNSDQGYDATLAAFDASVQRLGVDYLDLYLIHWPV----------PENNKFVD---TFKAFAHLRDQGRIRSIGVSNFEPEHLTTLIEETGIVPAVNQIELHPLLPQQELRD 174          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: S6PD_MALDO (NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.747e-34
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 1
Query:  100 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKP---------DIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLREFC 660
            L++G ++P +GLG W+ +   +   +  AIK GYRH DCA  Y +E ++G  L + F+ G+VKRE+L+IT+K+WN+ H    V EA   +L  LQIDYLDLYL+H+P+  K  ++G     L +           +  TW+ ME     G  R+IG+SN+      D L  + + PAV+Q E HP +Q+  L +FC
Sbjct:    6 LSSGYEMPVIGLGLWRLEKDELKEVILNAIKIGYRHFDCAAHYKSEADVGEALAEAFKTGLVKREELFITTKIWNSDH--GHVVEACKNSLEKLQIDYLDLYLVHYPMPTKHNAIGKTASLLGEDKVLDIDVTISLQQTWEGMEKTVSLGLVRSIGLSNYELFLTRDCLAYSKIKPAVSQFETHPYFQRDSLVKFC 199          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: NADO1_ORYSJ (Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.172e-33
Identity = 84/191 (43.98%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  118 IPSVGLGT----WQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVV-KREDLWITSKLW-NAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFK-PENLDKP--DIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLREFCK 663
            +P VG+GT    + S       A+  AI+ GYRH D A+IY  E  +G  + +    G++  R D+++TSK+W +  H    VP A + TLR+L +DY+DL L+HWPV +  G+  F  P+ +  P  D+   W+ ME  +  G ARAIGVSNFS KKL  LL +A V PAVNQVE +P WQQ+ LRE C+
Sbjct:   16 MPRVGMGTAAFPFTSSEDTTA-AMLRAIELGYRHFDTARIYATEGCVGEAVAEAVRRGLIASRADVFVTSKIWCSDLHAGRVVPAARE-TLRNLGMDYVDLLLVHWPVSLTPGNYDFPFPKEVILPSFDMEGVWRGMEECHRLGLARAIGVSNFSAKKLEQLLSLAAVRPAVNQVEVNPMWQQRTLREVCR 204          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: ARA1_YEAST (D-arabinose dehydrogenase [NAD(P)+] heavy chain OS=Saccharomyces cerevisiae GN=ARA1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 86/208 (41.35%), Postives = 118/208 (56.73%), Query Frame = 1
Query:   94 FVLNTGAKIPSVGLGTWQSDPGVVGN--AVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWP-----VKMKKGSVGFKPENLDKP---------DIPSTWKAMEALY---DSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLREFC 660
            F LN G +IP++GLGT      +     AV AAIKAGYRHID A  Y  E  +G  +K+  EDG +KREDL+IT+K+W      ++V  +L+ +L+ L ++Y+DL L HWP     +K  KG  G     +D           D   T+K +E +Y   +  + RAIGVSNFS + L  L++   V P VNQVE HP   Q +LR+FC
Sbjct:   25 FSLNNGVRIPALGLGTANPHEKLAETKQAVKAAIKAGYRHIDTAWAYETEPFVGEAIKELLEDGSIKREDLFITTKVWPVLW--DEVDRSLNESLKALGLEYVDLLLQHWPLCFEKIKDPKGISGLVKTPVDDSGKTMYAADGDYLETYKQLEKIYLDPNDHRVRAIGVSNFSIEYLERLIKECRVKPTVNQVETHPHLPQMELRKFC 230          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: DTDH_MUCMU (4-dihydromethyl-trisporate dehydrogenase OS=Mucor mucedo GN=tdh PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 79/197 (40.10%), Postives = 111/197 (56.35%), Query Frame = 1
Query:  106 TGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGS----------VG-FKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLREFCK 663
            TG K+P  G G W+ D       V  AIK GYR  D A  YGNE E+G  + K   +G+VKREDL+I +KLWN +H  + V    DR L+D  ++Y DLYL+H+PV ++             VG  K    ++  I   W  +E + D+G AR IGV+NF+ + + DLL  A + PAV Q+E HP   Q++L ++ K
Sbjct:   11 TGDKMPIRGFGCWKIDTKDCEETVYQAIKTGYRLFDGACDYGNEVEVGRGINKAINEGLVKREDLFIVTKLWNTFHSKKHVRALFDRQLKDTGLEYFDLYLIHFPVPLQYVDPATVYPPGWYVGDAKSLQFEQSPIHECWAELEKIVDAGLARNIGVANFNCQAILDLLTYARIKPAVLQIELHPYLPQERLVKWVK 207          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: AK1CD_MESAU (Aldo-keto reductase family 1 member C13 OS=Mesocricetus auratus GN=AKR1C13 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 1
Query:  109 GAKIPSVGLGTWQSDPGVVGNAVAAA---IKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN-----LDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACV--XPAVNQVECHPSWQQQKLREFCK 663
            G  IP++G GT++        A+ AA   I  GYRHID A  Y  E+EIG  ++   + G+VKRED++IT+KLW    +PE V  +L++    LQ++++DL++MH+PV MK G   F  +      LD  D  +TW+A+E   D+G  ++IGVSNF+ ++L  +L    +   P  NQVECH    Q KL ++CK
Sbjct:   13 GHCIPALGFGTYKPIEVPKSKAMEAANLAIGVGYRHIDTAYAYQIEEEIGQAIQSNIKAGIVKREDMFITTKLWCTCFQPELVRPSLEKXXXKLQLEHVDLFIMHYPVPMKAGDNDFPLDEQGKLLLDTVDFCATWEALEKXXDAGLVKSIGVSNFNMRQLERILNKPGLKYKPVCNQVECHVYNNQSKLLDYCK 207          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: Y1985_MYCSK (Uncharacterized oxidoreductase Mkms_1985 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1985 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 76/185 (41.08%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  100 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLRE 654
            LN G  IP VGLG WQ+ P     AVAAA+ AGYRH+D A  YGNE++ G  + +   D    R  +++ +KLWN+    +    A + ++  L +DYLDLYL+HWPV  K   V              T+KA   L + G+ R+IGVSNF  + L  L++   + PAVNQ+E HP   Q++LRE
Sbjct:    8 LNDGNSIPQVGLGVWQTPPEDTERAVAAALAAGYRHVDTAAAYGNEEQTGRAIAQSGLD----RSQVYLVTKLWNSEQGYDATLAAFEASVDRLGVDYLDLYLIHWPVPEKNLFV-------------DTFKAFARLREDGRIRSIGVSNFEPEHLRVLIDSTGIVPAVNQIELHPLLPQRELRE 175          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: AK1CL_RAT (Aldo-keto reductase family 1 member C21 OS=Rattus norvegicus GN=Akr1c21 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.333e-31
Identity = 77/198 (38.89%), Postives = 111/198 (56.06%), Query Frame = 1
Query:  100 LNTGAKIPSVGLGTWQSDPGVVGNA---VAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPEN-----LDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACV--XPAVNQVECHPSWQQQKLREFCK 663
            LN G  IP +G GT          A      AI AG+ H D A +Y  E  +G  +++   +G  +RED++ TSKLW     PE V  +L+ +L+ LQ+DY+DLYL+H+P+ +K G   F  +       D  D+ +TW+AME   D+G A++IGVSNF+ ++L  +L    +   P  NQVECH    Q KL +FCK
Sbjct:   10 LNDGHFIPVLGFGTAMPSELPKSKAKEVTKIAIDAGFHHFDSAFVYNTEDHVGEAIREKIANGTTRREDIFYTSKLWCTSLHPELVRSSLECSLKKLQLDYVDLYLIHFPMALKPGDENFPVDEHGKLLFDTVDLCATWEAMEKCKDAGLAKSIGVSNFNRRQLEKILNKPGLKYKPVCNQVECHLYLNQMKLLDFCK 207          
BLAST of CK937599 vs. ExPASy Swiss-Prot
Match: Y1919_MYCSJ (Uncharacterized oxidoreductase Mjls_1919 OS=Mycobacterium sp. (strain JLS) GN=Mjls_1919 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.273e-31
Identity = 75/185 (40.54%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  100 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDGVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMHWPVKMKKGSVGFKPENLDKPDIPSTWKAMEALYDSGKARAIGVSNFSTKKLGDLLEVACVXPAVNQVECHPSWQQQKLRE 654
            LN G  IP VGLG WQ+ P     AVAAA+ AGYRH+D A  YGNE++ G  + +   D    R  +++ +KLWN+    +    A + ++  L +DYLDLYL+HWPV  K   V              T++A   L + G+ R+IGVSNF  + L  L++   + PAVNQ+E HP   Q++LRE
Sbjct:    8 LNDGNSIPQVGLGVWQTPPEDTERAVAAALAAGYRHVDTAAAYGNEEQTGRAIAQSGLD----RSQVYLVTKLWNSEQGYDATLAAFEASVDRLGVDYLDLYLIHWPVPEKNLFV-------------DTFRAFARLREDGRIRSIGVSNFEPEHLRVLIDSTGIVPAVNQIELHPLLPQRELRE 175          
The following BLAST results are available for this feature:
BLAST of CK937599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
AK1CL_MOUSE2.869e-3439.20Aldo-keto reductase family 1 member C21 OS=Mus mus... [more]
Y2408_MYCS23.747e-3444.15Uncharacterized oxidoreductase MSMEG_2408 OS=Mycob... [more]
S6PD_MALDO3.747e-3438.78NADP-dependent D-sorbitol-6-phosphate dehydrogenas... [more]
NADO1_ORYSJ3.172e-3343.98Probable NAD(P)H-dependent oxidoreductase 1 OS=Ory... [more]
ARA1_YEAST4.142e-3341.35D-arabinose dehydrogenase [NAD(P)+] heavy chain OS... [more]
DTDH_MUCMU9.228e-3340.104-dihydromethyl-trisporate dehydrogenase OS=Mucor ... [more]
AK1CD_MESAU3.507e-3240.00Aldo-keto reductase family 1 member C13 OS=Mesocri... [more]
Y1985_MYCSK1.020e-3141.08Uncharacterized oxidoreductase Mkms_1985 OS=Mycoba... [more]
AK1CL_RAT1.333e-3138.89Aldo-keto reductase family 1 member C21 OS=Rattus ... [more]
Y1919_MYCSJ2.273e-3140.54Uncharacterized oxidoreductase Mjls_1919 OS=Mycoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_F02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937599 ID=CK937599; Name=CK937599; organism=Citrus sinensis; type=EST; length=663bp
GGGGGTCCACTCATTCGCTCACGCTTTTTGGCTCATTGCTCTCTCTCTCT
CTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGATTCGACAGTTCGTGC
TGAACACCGGAGCCAAAATCCCGTCCGTTGGATTAGGCACGTGGCAGTCT
GATCCTGGTGTCGTCGGCAATGCTGTTGCTGCCGCCATCAAGGCTGGATA
CCGACATATTGATTGTGCTCAAATTTACGGCAATGAAAAGGAGATTGGTT
TGGTGCTGAAGAAGTTTTTTGAAGATGGTGTTGTCAAGCGTGAGGATTTG
TGGATTACCTCTAAACTCTGGAATGCTTATCATGAACCAGAAGATGTACC
AGAGGCATTGGACAGAACTTTGCGGGACTTACAGATTGACTACCTTGATC
TATACCTTATGCACTGGCCAGTTAAGATGAAGAAGGGGTCTGTTGGCTTC
AAGCCAGAAAACCTTGATAAACCAGATATACCTAGCACGTGGAAAGCAAT
GGAGGCACTTTATGACTCTGGCAAGGCTCGAGCGATCGGAGTAAGCAATT
TTTCTACAAAGAAGCTTGGAGATTTGTTGGAAGTGGCATGTGTNNNTCCT
GCTGTTAACCAAGTGGAATGCCATCCTTCATGGCAGCAGCAAAAGCTTCG
TGAATTCTGTAAA
back to top