CX675341

Overview
NameCX675341
Unique NameCX675341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675341 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 73/285 (25.61%), Postives = 117/285 (41.05%), Query Frame = 1
Query:   73 MENFPIIDLSKLNGDERSATMEMINDAC---------ENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQM-----VASKGLEAVQSEVNDLDWES--TFFLRHLPVSNMAEIPDLEDDYRK---AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSN---YPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKD--DQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYP 855
            + + P++D S   G   +  +  + D C         ++WG F L  HG+  ELL  V+      +     ++ + +         G   + S  +   W    TF   +L        P    DYR     M+EF  E+  +A                    V    K     T   +   YP CP P    GL AHTD+G    + Q   V GLQL +   D+WV VP +  ++V+N+GD  +++TNG++ SV HR +   + +R+S+  F  P +   + P
Sbjct:   31 LHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAP 314          
BLAST of CX675341 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 69/280 (24.64%), Postives = 113/280 (40.36%), Query Frame = 1
Query:  112 GDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRF------KQMVASKGLEAVQSE-------VNDLDWEST-------------------FFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYP 855
            G ERS+ +  + +ACE  GFF +VNHGI   LL+   R        CMD  F      KQ    +  E+            + L W+ T                   + +R L   +   + ++   Y   M   ++EL +V                    + F+         +++ YP C +P    G   H D   + +L QD  V GL++  + +W  + P   ++V+N+GD    ++N +Y+S LHR +  +   R S+A F  P  D V+ P
Sbjct:   54 GAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHR--------CMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYF-----RRFFQRNDSIM--RLNYYPACQRPLDTLGTGPHCDPTSLTILHQD-HVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRP 317          
BLAST of CX675341 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 75/296 (25.34%), Postives = 127/296 (42.91%), Query Frame = 1
Query:   52 LRNKQITMENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASK-GLEAVQSEVNDLDWESTFFLRHLPVSNMAE------------IPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPK-------PDLIK-------GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYP 855
            +R K+      P IDLS     ERS   E++  ACE +GFF++VNH +  E++  +     E + K   ++ +   ++  G        N    E  + L H    +++E               + +DY KA+K+   E+ ++A                   K+       +   ++++YPP  K       P  I+       G   H+D   I+ + + + V GLQ+      W+ VPP      + +GD L+V+TNG++ SV HRV+  T   RMS+  F  P  + +I P
Sbjct:   10 IRTKKTKAVGIPTIDLSL----ERSQLSELVVKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGTSTPFGYGCKNIGPNGDKGELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSL------SKIIKDEHSDSL-LRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQ-ILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISP 293          
BLAST of CX675341 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 69/270 (25.56%), Postives = 120/270 (44.44%), Query Frame = 1
Query:   85 PIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYG---KCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLR-------HLPVSNMAEIPDLEDDYRKAMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK--GLRAHTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGSDAVIYP 855
            P+IDL+       S     I  ACE +GFF+++NHG+  +LL  +++     +       D+         G + +     DL W     L        H   +     P +   +R+A++E+  E+++++                         K      ++++YP   +  + +  G   HTD   +I L + ++  GLQ+ +KD  WVDV P   S  + +GD L+V+TNG++KSV HRV+  T+ +R+S+  F  P     I P
Sbjct:   28 PVIDLTD------SDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDKAGPPDPFGYGTKRIGPN-GDLGWLEYILLNANLCLESHKTTAIFRHTPAI---FREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQ-LISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAP 286          
The following BLAST results are available for this feature:
BLAST of CX675341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G3O21_WHEAT1.097e-1625.61Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
GAOX1_ORYSJ3.191e-1624.64Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX2_PEA1.213e-1525.34Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX3_ARATH2.069e-1525.56Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E12-J23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675341 ID=CX675341; Name=CX675341; organism=Citrus sinensis; type=EST; length=855bp
CTGGCTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGATTGTGGGA
GTTAAGAAACAAACAAATAACAATGGAGAATTTTCCAATTATTGACTTGT
CAAAGCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGATCAATGAT
GCCTGTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGGATATCACA
TGAGCTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTACGGGAAGT
GTATGGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCCTTGAAGCT
GTTCAGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTCTTCTTGCG
CCACCTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGAAGATGATT
ACAGGAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAAGGTTGCTGAG
CAACTTCTGGAATTGTTGTGTGAGAATCTTGGGCTGGAGGAAGGGTATTT
GAAGAAAGTGTTTTATGGGTCCAAAGGACCAACCTTTGGCACCAAGGTCA
GCAATTACCCTCCATGCCCAAAACCAGATCTGATCAAGGGACTTAGGGCC
CATACTGATGCTGGTGGCATCATCTTGCTCTTTCAAGATGACGAAGTCAG
TGGCCTCCAGCTGCTCAAAGATGACCAATGGGTTGATGTTCCACCCATGA
AACACTCCATTGTCATCAACCTCGGTGACCAACTTGAGGTGATAACCAAT
GGCAAGTACAAGAGTGTGCTACATCGCGTGATTGCTCAAACAGAGGGTAA
CAGGATGTCCATAGCATCATTTTACAATCCAGGCAGTGATGCTGTGATCT
ACCCG
back to top