CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CN_RAT (Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c23 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 51/179 (28.49%), Postives = 78/179 (43.58%), Query Frame = -1
Query:   10 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEEK 465
            +LF AGT+TTS+TL + +  L++ P+                            Y  AV+ E  R    +P  LP   + D +   +++PKG  V     ++  D+  + NP  F P  FL  N  FK  ++  +PF  G+R C G  LA   L L   +L+  F  K   E  D++ K
Sbjct:  297 NLFTAGTETTSTTLRFGLLLLMKYPEVQAKVHEELDRVIGRHQPPSMKDKMKLPYTDAVLHEIQRYITLLPSSLPHAVVQDTKFRDYVIPKGTTVLPMLSSVMLDQKEFANPEKFDPGHFLDKNGCFKKTDY-FVPFSLGKRACVGESLARMELFLFFTTLLQKFSLKTLVEPKDLDIK 474          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2BJ_MOUSE (Cytochrome P450 2B19 OS=Mus musculus GN=Cyp2b19 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 52/177 (29.38%), Postives = 79/177 (44.63%), Query Frame = -1
Query:   19 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW--KLEDENMDM 462
            LF AGT+TTS+TL ++   +L+ P                             Y  AV+ E  R     P+ LP K   D    G+++PK  +V+    +   D   +E P SF PE FL +N   K  N   +PF +G+RIC G  +A   L L   +++ +F     +  EN+D+
Sbjct:  296 LFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFTDLAPIGLPHKVTKDTLFRGYLIPKNTEVYPILSSALHDPRYFEQPDSFNPEHFLDANGALK-TNEAFMPFSTGKRICLGEGIARNELFLFFTTILQNFSLASPVAPENIDL 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2AA_RABIT (Cytochrome P450 2A10 OS=Oryctolagus cuniculus GN=CYP2A10 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+T+ +    L++ PD                            Y +AV+ E  R    +P+ L  +   D +   F++PKGA+VF    ++ +D   +  P  F P+ FL     FK ++   +PF  G+R C G  LA   L L   +++ +F ++ +    D++
Sbjct:  297 NLFFAGTETVSTTMRYGFLLLMKHPDVEAKVHEEIDRVIGRNRQPKFEDRAKMPYTEAVIHEIQRFTDMIPMGLAHRVTRDTKFRDFLLPKGAEVFPMLGSVLKDPKFFSKPREFYPQHFLDEKGQFK-KSDAFMPFSVGKRYCLGEGLARMELFLFFTTIMQNFRFRSQQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_RABIT (Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSP----------DA-----------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ L W++  L+ +P          DA                 YL+A + E  R    VP  +P     D  + GF +PK   +F+N W I  D   W +P  F PERFL   G+ ++ K  + ++  FG G+R C G  LA   + L L  L+   ++ +
Sbjct:  313 DIFGAGFDTITTALSWSLMYLVTNPRRQRKIQEELDAVVGRARQPRLSDRPQLPYLEAFILELFRHTSFVPFTIPHSTTRDTTLNGFHIPKECCIFINQWQINHDPQLWGDPEEFRPERFLTADGAAIN-KPLSEKVTLFGLGKRRCIGETLARWEVFLFLAILLQRLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C97B2_SOYBN (Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 53/196 (27.04%), Postives = 84/196 (42.86%), Query Frame = -1
Query:   37 LFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADV-------EIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL--GSNLDFKG-------------------RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE 462
            + +AG +TT++ L WA+  L ++P                            Y++ +V E LRL+P  PLL+ R   +DV       E  G+ +P G  VF++ + + R    W+ P  F PERFL    N + +G                    +F  +PFG G R C G   A+    + L  L+ +FD +L+
Sbjct:  350 MLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEVDLVLGTGRPTFESLKELQYIRLIVVEALRLYPQPPLLIRRSLKSDVLPGGHKGEKDGYAIPAGTDVFISVYNLHRSPYFWDRPDDFEPERFLVQNKNEEIEGWAGLDPSRSPGALYPNEVISDFAFLPFGGGPRKCVGDQFALMESTVALTMLLQNFDVELK 545          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 53/163 (32.52%), Postives = 72/163 (44.17%), Query Frame = -1
Query:   43 GTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 450
            G +TTSSTL + + EL   P                             YL  VV ETLR+ P +   L R    DVEI G  +PKG  V V  + +  +   W  P  F PERF  +N D     +  +PFG+G R C G+  AI  + L L  ++ +F +K
Sbjct:  306 GYETTSSTLSFIIYELTTHPHVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFP-IAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEFRPERFSKNNKD-SINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSS L + +  L   PD                            YL  V+ ETLRL+P +   L R    DVEI G  +PKG+ V + ++ +  D   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L L  ++ +F ++
Sbjct:  306 AGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYP-ITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPEEFQPERFSKEN---KGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQ 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AF_CAVPO (Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 55/163 (33.74%), Postives = 73/163 (44.79%), Query Frame = -1
Query:   46 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 453
            AG +T+SSTL   M  L   PD                            YL  VV ETLRL+P V   + R +  D EI G   PKG  V + ++A+ RD   W  P  F PERF   N +     +  +PFG+G R C G  +A+  L L L  L+ +F +
Sbjct:  305 AGYETSSSTLSCIMYSLATHPDVQKKLHQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYP-VANRIERMSKKDFEINGMSFPKGTLVMIPSFALHRDSKYWPEPDEFRPERFSKKNKE-NIDPYIYMPFGNGPRNCIGRRMALMNLKLALIRLLQNFSF 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_MACFU (Cytochrome P450 1A2 OS=Macaca fuscata fuscata GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 46/172 (26.74%), Postives = 76/172 (44.19%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F A  DT ++ + W++  L+  P+                            YL+A + ET R    VP  +P     D  + GF +P+   VF+N W +  D   W +P  F PERFL   G+ ++ K  + +++ FG G+R C G  L    + L L  L+   ++ +
Sbjct:  313 DIFGAEFDTIATAISWSLMYLVTKPEIQRKIQKELDAVIGRGRRPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTTLNGFYIPRECCVFINQWQVNHDPQLWGDPSEFRPERFLTAEGTTIN-KPLSEKIMLFGLGKRRCIGEVLGKWEVFLFLAILLQQLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C5082_DICDI (Probable cytochrome P450 508A2 OS=Dictyostelium discoideum GN=cyp508a2-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD--------------------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIA-GFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK-LEDENMDMEEKFGI 465
            D F+AG DT++++LE  +  L+  P+                                       ++ ++ KETLR  P  P  LPR   +D+ +  G  +PK AQ+ +N  A+ R+E  +ENP  F P RFL S+      N   +PF  G R C G   A   +++ L ++I +F +K ++ + +D  + +G+
Sbjct:  289 DFFLAGVDTSATSLELIVMMLINYPEYQEKAYNEIKSALSSNGGGGGGGLTQRNKVLLSDRQSTPFVVSLFKETLRYKPISPFGLPRSTTSDIILNNGQFIPKNAQILINYHALSRNEEYFENPNQFDPTRFLNSD-----SNPAFMPFSIGPRNCVGSNFAQDEIYIALSNMILNFKFKSIDGKPVDETQTYGL 478          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2CN_RAT6.961e-1328.49Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c... [more]
CP2BJ_MOUSE6.961e-1329.38Cytochrome P450 2B19 OS=Mus musculus GN=Cyp2b19 PE... [more]
CP2AA_RABIT6.961e-1325.99Cytochrome P450 2A10 OS=Oryctolagus cuniculus GN=C... [more]
CP1A2_RABIT6.961e-1329.65Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CY... [more]
C97B2_SOYBN6.961e-1327.04Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=... [more]
CP3AS_BOVIN9.092e-1332.52Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AG_MOUSE9.092e-1331.33Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
CP3AF_CAVPO9.092e-1333.74Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15... [more]
CP1A2_MACFU9.092e-1326.74Cytochrome P450 1A2 OS=Macaca fuscata fuscata GN=C... [more]
C5082_DICDI9.092e-1327.18Probable cytochrome P450 508A2 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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