CK937533

Overview
NameCK937533
Unique NameCK937533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDMK++E  VR ++MEGLLW ASKL PVGYGI KLQIM  I DD VSVD L E+    +   ++VQS DI AFNKI
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 222          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VLLDVKPWDDETDMK++E  VR ++M+GLLW ASKL PVGYGI KLQIM  I DD VS+D L E+    E   ++VQS DI AFNKI
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNKI 222          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 58/87 (66.67%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR VQM+GL+W +SKL PVGYGIKKLQI   + DD V  D L EE    E   +YVQS DI AFNKI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEEITKFE---DYVQSVDIAAFNKI 265          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +QMEGL+W ASKL PVGYGIKKLQI   + DD V  D L EE++      ++VQS D+ AFNKI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTDVL-EENI--TAFEDFVQSMDVAAFNKI 228          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +Q +GL+W +SKL PVGYGIKKLQI   + DD V  D ++EE +     +EYVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQI--TAFDEYVQSMDVAAFNKI 225          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE +R +QM+GLLW +SKL PVGYGIKKLQI   + DD V  D L E+    E   ++VQS D+ AFNKI
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEKITAFE---DFVQSMDVAAFNKI 227          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +Q +GL+W +SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 225          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +Q +GL+W +SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 225          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +Q +GL+W +SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 225          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM KLEE VR +Q +GL+W +SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 225          
The following BLAST results are available for this feature:
BLAST of CK937533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B2_BOMMO1.408e-2465.52Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_DROME3.137e-2465.52Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1D_XENLA4.098e-2466.67Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENTR4.098e-2464.37Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_BOVIN1.557e-2362.07Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_XENLA2.656e-2362.07Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1B_MOUSE3.469e-2362.07Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN3.469e-2362.07Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK3.469e-2362.07Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT4.530e-2362.07Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937533 ID=CK937533; Name=CK937533; organism=Citrus sinensis; type=EST; length=626bp
GGGAGAGGAAAAGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCAT
CAGCCAAAAAGAAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAG
CCTTGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAGG
TGTTCAGATGGAAGGATTACTCTGGAGAGCCAGCAAACTTGCACCTGTTG
GATATGGTATCAAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTG
GTGTCTGTTGACACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAA
TGAATATGTCCAGAGCTGCGATATTGTAGCCTTCAACAAAATCTAATTTG
TGGATCCTTTGGCAAAGTGGGTGCTAGAGAGGCTTCCGGGGATTTTGTCT
TGGATAATGATCATAGCAAAGTGATATTTATTTTATAATTTTTATTTTTG
TTTCAGGAGTCTTGTGTGTTCCATTATGGATTTGTTCTTCTATGGATGCT
GTCTCTTCGGAGTTTTTTAACTGTGACTGAAGTTGGTATGCTATATCTGC
AATGCAGAACTCTTTAGAGCATTAATGATTGAGAGCGGCTTTGCCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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