CK937533

Overview
NameCK937533
Unique NameCK937533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR VQ++GL+W ASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 280          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR +Q++GL+W ASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR +Q++GL+W ASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR +Q++GL+W ASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFNKI 281          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLD+KPWDDETDM  +E  VR + M+GL+W ASKL PV +G+KKLQI   + DD VSVD L+E+    E   +YVQS DI AFNKI
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQSVDIAAFNKI 237          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR VQ++GL+W +SKL PVGYGI+KLQI   + DD V  D L EE    E   E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEEITKFE---EHVQSVDIAAFNKI 280          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.009e-22
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR +Q++GL+W ASKL PVGYGI+KLQI   + DD V  D L+EE + +    E+VQS DI AF+KI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEITK--FEEHVQSVDIAAFDKI 281          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 103.99 bits (258), Expect = 6.542e-22
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V+LDVKPWDDETD+ ++E+ VR ++M+GL+W  +KL P+GYGIKKLQI+  I D  VSVD LIE+  +     ++VQS DIVAFNKI
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 263          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.542e-22
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V+LDVKPWDDETD+ ++E+ VR ++M+GL+W  +KL P+GYGIKKLQI+  I D  VSVD LIE+  +     ++VQS DIVAFNKI
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 213          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.457e-21
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V+LD+KPWDDETDM ++E+ VR VQM+GL+W A+KL P+ YGIKKL IM  + DD VS+D L +E + E    ++VQS DI AFNK+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDEL-QEKISE--FEDFVQSVDIAAFNKV 207          
The following BLAST results are available for this feature:
BLAST of CK937533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1D_RABIT7.728e-2362.07Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT1.318e-2260.92Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MACFA1.318e-2260.92Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN1.318e-2260.92Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_ARTSA1.722e-2258.62Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1D_BOVIN2.936e-2262.07Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1D_MOUSE5.009e-2259.77Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1B2_CAEEL6.542e-2258.62Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL6.542e-2258.62Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_ARTSA1.457e-2157.47Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937533 ID=CK937533; Name=CK937533; organism=Citrus sinensis; type=EST; length=626bp
GGGAGAGGAAAAGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCAT
CAGCCAAAAAGAAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAG
CCTTGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAGG
TGTTCAGATGGAAGGATTACTCTGGAGAGCCAGCAAACTTGCACCTGTTG
GATATGGTATCAAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTG
GTGTCTGTTGACACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAA
TGAATATGTCCAGAGCTGCGATATTGTAGCCTTCAACAAAATCTAATTTG
TGGATCCTTTGGCAAAGTGGGTGCTAGAGAGGCTTCCGGGGATTTTGTCT
TGGATAATGATCATAGCAAAGTGATATTTATTTTATAATTTTTATTTTTG
TTTCAGGAGTCTTGTGTGTTCCATTATGGATTTGTTCTTCTATGGATGCT
GTCTCTTCGGAGTTTTTTAACTGTGACTGAAGTTGGTATGCTATATCTGC
AATGCAGAACTCTTTAGAGCATTAATGATTGAGAGCGGCTTTGCCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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