CK937533

Overview
NameCK937533
Unique NameCK937533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE+ VR ++M+GL+W ASKL  VGYGIKKL I L + D  VS D L E+    +   +YVQS D+ AFNKI
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V LDVKPWDDET M +LE+AVR +QM+GL+W  SKL PVG+G+ K QI L + DD VS++ L EE    E   +YVQS DI A +K+
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQSTDIAAMSKL 214          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            ++LDVKPWDDETD+K +E  +R +  +GLLW ASK  PV +GI+KL I   + DD VS+D L EE    E + ++VQS DI AFNKI
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQSVDIAAFNKI 256          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +LLDVKPWDDETDM +LE  VR VQ++GL+W +SKL PVGYGI+KLQI   +  +      L   H +E    E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV--ECRWGRPLERSHQVE----EHVQSVDIAAFNKI 277          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V LDVKPWDDETD+ +L   V+ ++MEGL W A +  PVG+GIKKLQI L + D LVS+D L  +  +EE   ++VQS DI A  K+
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL--QAAVEED-EDHVQSTDIAAMQKL 213          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            V LDVKPWDDET+++++   V+ ++MEGL W A +  P+G+GIKKLQI   + DD VS+D L  +  +EE   ++VQS DI A  K+
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL--QQSIEED-EDHVQSTDIAAMQKL 206          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   83 VLLDVKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            +L DVKPWDD  D++ L   +  V+ +GLLW   KL PV +G+KKLQ ++ I DD V  D L E   L     + VQS DIVA+NKI
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEE---LIMSFEDEVQSMDIVAWNKI 222          
BLAST of CK937533 vs. ExPASy Swiss-Prot
Match: EF1B_PIG (Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 41/83 (49.40%), Postives = 47/83 (56.63%), Query Frame = 2
Query:   95 VKPWDDETDMKKLEEAVRGVQMEGLLWRASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 343
            VKPWDDE  M KLEE V  +Q +GL+     L PVGYGIK         DD V  D L E+    E   +YVQS D+ AFNKI
Sbjct:  145 VKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXXXXDDKVGTDMLEEQITAFE---DYVQSMDVAAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CK937533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DICDI1.234e-2058.62Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1B_SCHPO3.590e-2056.32Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_DROME4.688e-2054.02Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP4.388e-1856.32Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL1.844e-1652.87Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST5.364e-1648.28Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR2.254e-1448.2825 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]
EF1B_PIG5.551e-1349.40Elongation factor 1-beta OS=Sus scrofa GN=EEF1B PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937533 ID=CK937533; Name=CK937533; organism=Citrus sinensis; type=EST; length=626bp
GGGAGAGGAAAAGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCAT
CAGCCAAAAAGAAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAG
CCTTGGGATGATGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAGG
TGTTCAGATGGAAGGATTACTCTGGAGAGCCAGCAAACTTGCACCTGTTG
GATATGGTATCAAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTG
GTGTCTGTTGACACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAA
TGAATATGTCCAGAGCTGCGATATTGTAGCCTTCAACAAAATCTAATTTG
TGGATCCTTTGGCAAAGTGGGTGCTAGAGAGGCTTCCGGGGATTTTGTCT
TGGATAATGATCATAGCAAAGTGATATTTATTTTATAATTTTTATTTTTG
TTTCAGGAGTCTTGTGTGTTCCATTATGGATTTGTTCTTCTATGGATGCT
GTCTCTTCGGAGTTTTTTAACTGTGACTGAAGTTGGTATGCTATATCTGC
AATGCAGAACTCTTTAGAGCATTAATGATTGAGAGCGGCTTTGCCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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