CK937528

Overview
NameCK937528
Unique NameCK937528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.896e-22
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYAMG 634
            P+G F TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y S A   T+ +AMG
Sbjct:   75 PRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          

HSP 2 Score: 49.6766 bits (117), Expect = 8.896e-22
Identity = 23/61 (37.70%), Postives = 32/61 (52.46%), Query Frame = 3
Query:  207 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 389
            + KE+  L  DPP      P  ED+     +I GP  +PYAGGVF + +    D+P  PP+
Sbjct:   16 VYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPR 76          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.159e-21
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYA 628
            PKG F TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +       Y   A+ +T+ +A
Sbjct:   78 PKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          

HSP 2 Score: 51.2174 bits (121), Expect = 1.159e-21
Identity = 23/63 (36.51%), Postives = 35/63 (55.56%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 389
            K++ +E+  L  DPP         ED+   QA+I GP+ +PY GG+F + +    D+P  PPK
Sbjct:   17 KQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPK 79          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.165e-21
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 3
Query:  186 RVMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPP 386
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPP 70          

HSP 2 Score: 56.225 bits (134), Expect = 1.165e-21
Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQK 622
            F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ D+ +Y    R   +K
Sbjct:   74 FECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.517e-21
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKVKYESTARSWTQKYAMG 634
            P   F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + ++ DK  Y S  R  T  YA G
Sbjct:   69 PSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          

HSP 2 Score: 53.1434 bits (126), Expect = 1.517e-21
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 3
Query:  201 KRILKELKDLQK-DPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            KR+ KE    Q  D        PV + DMFHW+A I GP+++PY GG +++ IH    YP  PP V
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSV 71          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.320e-21
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYA 628
            PK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   78 PKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 49.6766 bits (117), Expect = 3.320e-21
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 389
            ++++KEL+D++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPK 79          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.317e-21
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYA 628
            PKG F TK+FHPN+  NG IC++ LK+ W   L +  +LL+I  LL  PNP+  L  E   +       Y   AR  T+ +A
Sbjct:   77 PKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHA 158          

HSP 2 Score: 52.373 bits (124), Expect = 4.317e-21
Identity = 24/63 (38.10%), Postives = 34/63 (53.97%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 389
            +++ KE+ DL   PP      P  +D+   QATI GP  +PY GG F + +    D+P  PPK
Sbjct:   16 RQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPK 78          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.319e-21
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYA 628
            PK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   78 PKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          

HSP 2 Score: 49.2914 bits (116), Expect = 4.319e-21
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK 389
            ++++KEL+D++  PP          D+   QA I GP+ +PYA GVF V +    D+P  PPK
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPK 79          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-21
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYE 595
            P   F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D ++Y+
Sbjct:   93 PTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          

HSP 2 Score: 53.5286 bits (127), Expect = 4.335e-21
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            +KR+  EL  L        SA P ++ ++ HW  TI GPSD+ Y G  F +++ FP +YP+ PP +
Sbjct:   30 TKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTI 95          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 4.348e-21
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY 592
            F + ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++ +D  +Y
Sbjct:   77 FLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          

HSP 2 Score: 56.6102 bits (135), Expect = 4.348e-21
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 3
Query:  198 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            +KR+  EL  L      S SA PV + D+ +W   I GP D+PY+G  F V++ FP +YPF PP +
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMI 75          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.639e-21
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYE 595
            F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ S++ +Y+
Sbjct:   98 FTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          

HSP 2 Score: 57.7658 bits (138), Expect = 5.639e-21
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 3
Query:  186 RVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            R   SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V
Sbjct:   28 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVV 96          
The following BLAST results are available for this feature:
BLAST of CK937528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
UBE2S_DANRE8.896e-2241.67Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2S_NEMVE1.159e-2141.46Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC7_SCHPO1.165e-2142.65Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC16_SCHPO1.517e-2141.86Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2S_DROGR3.320e-2143.90Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBE2S_BRAFL4.317e-2140.24Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2S_DROVI4.319e-2143.90Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBC11_SCHPO4.335e-2139.44Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST4.348e-2142.42Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_SPISO5.639e-2143.28Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937528 ID=CK937528; Name=CK937528; organism=Citrus sinensis; type=EST; length=712bp
GGGGGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGATAGAGG
AGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTT
TCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGGTCTTAA
GGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCATGGCTTCA
AAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTC
TTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAA
TTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACC
ATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTAGG
ACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGA
TATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGC
TCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACCCTCTTGTA
CCGGAGATTGCCCACATGTACAAGTCCGACAAGGTCAAATATGAATCCAC
GGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGAT
ATTGCAGAANNNGGAACACATTTATTGAAATATGTTGTGTGNNNTGTCTA
TCTATTTTCTTT
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