CK937496 | Citrus Genome Database

Overview


Name	CK937496
Unique Name	CK937496
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/110 (63.64%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K+ SRS++AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 70/111 (63.06%), Postives = 78/111 (70.27%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGR+ RFL+ G YAERVGAGAP                  GNAARDNKK RI PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 1

Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +  S SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK  K
Sbjct:   13 SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124

The following BLAST results are available for this feature:

BLAST of CK937496 vs. ExPASy Swiss-Prot

BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239


Match Name	E-value	Identity	Description
H2A_MYTED	1.495e-31	63.06	Histone H2A OS=Mytilus edulis PE=3 SV=3	[more]
H2A_MYTCH	1.495e-31	63.06	Histone H2A OS=Mytilus chilensis PE=3 SV=3	[more]
H2A_MYTCA	1.495e-31	63.06	Histone H2A OS=Mytilus californianus PE=3 SV=3	[more]
H2A_DROYA	1.495e-31	63.64	Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=...	[more]
H2A_DROSI	1.495e-31	63.64	Histone H2A OS=Drosophila simulans GN=His2A PE=3 S...	[more]
H2A_DROME	1.495e-31	63.64	Histone H2A OS=Drosophila melanogaster GN=His2A PE...	[more]
H2A_DROHY	1.495e-31	63.64	Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2	[more]
H2A_DROER	1.495e-31	63.64	Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=...	[more]
H2A_ASTRU	1.495e-31	63.06	Histone H2A OS=Asterias rubens PE=1 SV=2	[more]
H2A_COCIM	1.952e-31	61.61	Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA